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Information for unigene UN28084
| FASTA Sequence |
| Unigene ID: UN28084 | Length: 743 |
SSR | | TTTTTCTTTCTATTCTCTTCTCCAAGTTTTGTAGTTTTACACAAGGCGAAATGGCCGGTGAGCAAATGAAACCTGTAGCTTCTCTC
CTTCTGGTGCTCAACTTCTGCATGTATGTGATCGTTCTAGGGATTGGAGGATGGGCCATGAACCGAGCCATCGACCACGGATTCGA
AATTGGCCCTGATCTGAAACTACCAGCACATTTCTCCCCGATTTATTTTCCGATGGGAAACGCAGCCACAGGATTCTTTGTGGTGT
TCGCGTTGCTGGCGGGAGTAGTTGGTGCGGCTTCCACAATCTCGGGCCTTAGCCACATTCGTTCGTGGACCGTGGGAAGCTTGCCT
GCTGCAGCCACAGCTGCAACTATTGCTTGGACCCTCACAGTCCTTGCCATGGGATTCGCCTGGAAAGAAATCGAGCTTCACGTGCG
AAATGCAAGACTCAGAACCATGGAGGCGTTCTTGATCATACTCTCAGTCACGCAGCTTCTTTACATCGCCGCTGTTCACGGCGTGA
GGAGACCTACTTAAGGATTCATGGGTGTTTCTACTTTTCAAGTTAATCATCCCGAAACTTGGGATTGAGTATGTGAGTGTTTGTGT
GTGTGTGATTTTTATTTTATAGGAAGTTGAGCAAAAGCTTAAGTTAATTCAATTCATGCATTCTTTGTGTACAAAAGGATCAGAGC
TTGTTTTGTGTGTGTGTCACTTTGTTTTCATGGAATAAAATTAAACTTTGAGGCT
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_174245 AWPM19-like protein [Arabidopsis thaliana] | 763 | 5e-079 |
| XP_002890814 hypothetical protein ARALYDRAFT_473160 [Arabidopsis lyrata subsp. lyrata] | 761 | 8e-079 |
| ACU16487 unknown [Glycine max] | 661 | 3e-067 |
| XP_002519754 conserved hypothetical protein [Ricinus communis] | 653 | 3e-066 |
| XP_002331859 predicted protein [Populus trichocarpa] | 647 | 1e-065 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C7P9 Plasma membrane associated protein, putative; 66162-66952 | 763 | 3e-079 |
| C6T477 Putative uncharacterized protein | 661 | 2e-067 |
| B9S185 Putative uncharacterized protein | 653 | 2e-066 |
| B9N9D5 Predicted protein | 647 | 9e-066 |
| C6T3W1 Putative uncharacterized protein | 642 | 4e-065 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G29520.1 AWPM-19-like membrane family protein | 763 | 2e-081 |
| AT5G46530.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, membrane; CONTAINS InterPro DOMAIN/s: AWPM-19-like (InterPro:IPR008390); BEST Arabidopsis thaliana protein match is: AWPM-19-like membrane family protein (TAIR:AT1G29520.1); Has 98 Blast hits to 98 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 98; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 632 | 3e-066 |
| AT5G18970.1 AWPM-19-like membrane family protein | 354 | 6e-034 |
| AT1G04560.1 AWPM-19-like membrane family protein | 236 | 3e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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