RadishBase

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Information for unigene UN28114

FASTA Sequence

Unigene ID: UN28114	Length: 963	SSR
GGGTTTCTTCGAAGTTTCTTCACTGTGCGTCAAAAGATTTTCTCTCAGAGGTTTTCTCGGGGAAGAAGAAACTGACTACATCTTAT ATAAGATCCTAGAGAGAGAGAGAGAGAGAGATATCTAAACAGCTTAGTCTCCGATGGGAACGCTTCAGTCATTCCGAAGAGCGTAC GGAGCCTTAAAAGACACCACTAAAGTCGGCCTCGTCCGAGTCAACAGCGATTACGCCGATATAGAGGTTGCCATAGTCAAAGCTAC TAACCATGTTGAGTGTCCTCCCAAGGATCGCCATCTCAGGAAGATCTTCATAGCCACATCAGCAACTAGGCCTCGAGCAGATGTTG CTTACTGCATTCACACTCTCTCTCGTCGACTGCACAAAACCAGAAACTGGACGGTTGCGTTAAAAGCATTGCTTGTTCTACACCGG CTTGTAGGGGAGGGAGATCCTACATTTAGAGAAGAACTTTTGAACTTTTCCCGAAAAGTACGCTTCCTGCAGCTTTCTAATTTCAA GGATGACTCATCCACAGCGGCATGGGATTGTTCGGTCTGGGTACGCGCTTATGCTTTATTTCTCGAGGAACGGCTTCAGTGCTTCA GAGTTTTGAAATATGATATCGAGGCTGAACGTCTTCCTAAAGTTTCCCCAGGGCAAGAGAAGGGGTATAGCAAAACAAGGGATTTA GATGGTGAACAACTCTTGGAACAGTTGCCTGCTTTACAGCAGCTTCTGCATCGGCTCATGGGTTGTAAGCCAGAAGGTGCTGCAAA GCAGAATCATATCATACAGTATGCACTCGCTTTGGTGTTGAAGGAGAGTTTTAAAGTGTACTGTGCCATCAATGAAGGTATTATCA ATCTAGTAGAAAAGTTCTTTGAAATGCCAAGACATGATGCCGTCAAGTCCCTTGATATATACAAGCGCGCGGGTTTGCAGGCTGGC AATCTTTCTCAGTTCTA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_172944 putative clathrin assembly protein [Arabidopsis thaliana]	1293	3e-140
NP_565267 putative clathrin assembly protein [Arabidopsis thaliana]	1207	3e-130
XP_002875082 hypothetical protein ARALYDRAFT_904366 [Arabidopsis lyrata subsp. lyrata]	1207	3e-130
XP_002311513 predicted protein [Populus trichocarpa]	1181	3e-127
CBI26868 unnamed protein product [Vitis vinifera]	1165	2e-125

Swiss-Prot top hits (Blast detail)	Score	e value
P94017 Putative clathrin assembly protein At1g14910	1293	1e-141
Q8LBH2 Putative clathrin assembly protein At2g01600	1207	1e-131
Q9LVD8 Putative clathrin assembly protein At5g57200	1057	3e-114
Q8VYT2 Putative clathrin assembly protein At4g25940	999	1e-107
Q9LHS0 Putative clathrin assembly protein At5g35200	544	8e-055

TrEMBL top hits (Blast detail)	Score	e value
B9HJD6 Predicted protein	1181	2e-127
B9SP68 Clathrin assembly protein, putative	1160	5e-125
B9HW44 Predicted protein	1133	7e-122
B4FLN4 Putative uncharacterized protein	1109	4e-119
B7ZXB5 Putative uncharacterized protein	1109	4e-119

Arabidopsis top hits (Blast detail)	Score	e value
AT1G14910.1 epsin N-terminal homology (ENTH) domain-containing protein	1293	1e-142
AT2G01600.1 epsin N-terminal homology (ENTH) domain-containing protein	1207	1e-132
AT5G57200.1 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related	1057	2e-115
AT4G25940.1 epsin N-terminal homology (ENTH) domain-containing protein	999	1e-108
AT5G35200.1 epsin N-terminal homology (ENTH) domain-containing protein	544	8e-056

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			67%


21	1			33%

Unigene Members	Member information