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Information for unigene UN28118
| FASTA Sequence |
| Unigene ID: UN28118 | Length: 1004 |
SSR | | CCACTTCCAACCCTACACAAAGACAGATCCTCTCCATCCATCCTCTTTATATCTCAACACGTTTTTTGGAATTTTTTGGGTCAGAT
GACTTGACTCTTTGTAGATTCTAACGTCAATATGGGTTTAAGATTTCATCAAATGCCCTATCTCTTCTAGTTTTCTTCAAGAGTAT
TGTGTCCGAAACTCATTCGTCCCTCTTTTCTTGCTCTGTTTTTAACTACTAGTTTGTCGCTGAAAAGTAGAGTCCCCTGTTTTTTC
TGTTACTCTGTTCTCTCAACTCTGAAAATGGCGTCCAATAACAGGAAGATGCTCTATCCGTCTCAACCGGGACAAAGCTGCACCTT
CACGTTCTACAACCCTTTTTGGGAGAAGTACCCACCTCCGCCACCACCACCACCACCTCCACAGAGAGATCTCTCTGTCTTCTTCT
CCACCTCAATCTGCATAACAGGCGCAGTCTTACTCTTCCTATTCCTCACCGTCTTCCTCTACTTCTACATCACGCAGAGCTCACCC
GCCGCAGTAGCTCCCGTCAGCACCAACCGACGAGAGGACGAGAACGAAGAAGACGGTGAGAGAGATATCTCAGGCGACCATCACTT
CTGGCGTATCTCGACCCCCGGTCTCCACCGTTCAGCGATCGATTCTATAACAGTCGTCGGATTCAAAAAGGAAGAAAGGATAATCG
ACGGCACAGATTGTTCCGTCTGCTTAAGCGAATTCGAACAAGACGAAGCGCTTAGACTCTTACCAAAGTGTAGCCACGCCTTCCAC
GTCAACTGCATCGACATGTGGTTGCTCTCTCACAAAAACTGTCCTCTATGCCGAGCCCCTGTTTTCTCCACTGAGCCTCGTAAAAC
GAAAAGAGAGATGAATCATCATCAATCAGAGTCTGGAACAGGGAATGGAGAAGGAGTAGAGAGTTCGGGATCAAGAAACGCTAATG
TTCTTCCGAGGTCACAAAGCGATTTAGCTAGACATTGTGGTGGCTCGGCAAGGTTGGA
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002871419 hypothetical protein ARALYDRAFT_350245 [Arabidopsis lyrata subsp. lyrata] | 704 | 6e-072 |
| NP_196600 E3 ubiquitin-protein ligase RING1 [Arabidopsis thaliana] | 678 | 6e-069 |
| XP_002513984 ring finger protein, putative [Ricinus communis] | 402 | 6e-037 |
| XP_002310548 predicted protein [Populus trichocarpa] | 383 | 1e-034 |
| XP_002301077 predicted protein [Populus trichocarpa] | 375 | 8e-034 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LX93 RING-H2 finger protein ATL5F | 678 | 3e-070 |
| Q8LFY8 RING-H2 finger protein ATL1O | 320 | 8e-029 |
| Q9LF64 Probable RING-H2 finger protein ATL5G | 292 | 1e-025 |
| Q5XF85 RING-H2 finger protein ATL4J | 262 | 4e-022 |
| Q9SRQ8 RING-H2 finger protein ATL3A | 259 | 1e-021 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RJR5 Ring finger protein, putative | 402 | 4e-037 |
| B9HF76 Predicted protein | 383 | 7e-035 |
| B9GV12 Predicted protein | 375 | 6e-034 |
| B9S9D3 Ring finger protein, putative | 369 | 3e-033 |
| B9SNU8 Ring finger protein, putative | 359 | 4e-032 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G10380.1 RING1; protein binding / ubiquitin-protein ligase/ zinc ion binding | 678 | 2e-071 |
| AT4G33565.1 protein binding / zinc ion binding | 332 | 3e-031 |
| AT1G72220.1 zinc finger (C3HC4-type RING finger) family protein | 320 | 8e-030 |
| AT5G17600.1 zinc finger (C3HC4-type RING finger) family protein | 292 | 1e-026 |
| AT4G28890.1 protein binding / ubiquitin-protein ligase/ zinc ion binding | 262 | 4e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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