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Information for unigene UN28139

FASTA Sequence
Unigene ID: UN28139Length: 1356 SSR 
CTCTCTCTCTCTCTTTCGTCTTCTTCCTACAAAAACCAATCTCACCACAGCTTCTCTCTAGGGTTTCTCTGTCTTCCTTCGGATCT
ATGTGAAGGCTATTATTAACTAGTACCCTGACTCTGTCTGAACCACAGTTAAAAAGCTTCCCAAGTTTCAAACTCTCCAGAAGGAG
ATTTCGAGGAATGTCAAGCGGTCGAAGCACTCACTGGTGCCACAGATGCCAACGCGGTGTCTACCTACGCGGTCCAGATTCCCTCT
GTACCTATTGTGGAGGAGGGTTTGTCGAGGAAATCGATGTACCACCACCACCACCAATTGATACGCTTAGACCCCACAGAGATGTT
GAACGCGGTCCAACGTATGATCTCATGGAAGCTTTCTCAGCTTTCATGAGAAGCCGCTTAGCCGAAAGAAGCCACGACCGAGATAT
CACCACAAGAATCACCTCTAGTGGTGGTGGTTCAGAAAGCTTCTCGAGTATAGCTCCTTTCTTGATCTTCGGTGGCCAAGCTAATA
ACACATCAGTCGAAGCCTTGCTAAACACCTCACCTGGTATCGGCATCGCTCGTGGTGGAAACACCAATGCTGGTGACTACTTCTAC
GGACCTGGTCTCGAGGAACTTATCGAGCAGCTTTCGTCGTCTGGGGGGACTACTACTCACCATCGAGGCCCACCGCCTGCGGCGAA
ATCATCTATCGACGCGTTACCGACGGTCAAGATCACGCAGAAGCATCTCAAGTCGTCGGACTCTCACTGTCCGGTTTGTAAAGACG
AGTTCGAGCTCAAGTCGGAAGCGAAACAGATGCCGTGTAAACATGTGTATCATTCCGACTGCATCGTCCCGTGGCTGGTTCAGCAC
AACACGTGCCCGGTTTGTCGTAAAGAGTTGCCATCGTCGAGAGGGTCGTCTTCGAGCACACAGGGTGATCAGAGTAGAAGCGGCGG
CGGCGGGAGCAGGAGAAGGAACCCTTTCTCTAGTCTCTGGCCGTTCCGGTCGTCGTCTAGCTCGAGGGATAGCCAGAACCGGAGAG
ATACGAACAGCACAGCGGGTGCAGAAGAAGGAGGGCAGTCTAATTACCATCACCAGCTACAACAACAACATGAGCAACAACAGTCA
CATATGGGTTATAGTGGATGGCCTTTTGACTATTAAAAGGGTAAAAAAAAATCTAGAAACTTTAACTACTTGTTAAGGCCTTTTTT
ATTTTATTTCAACTTTGTCTTGTTCTGTCTGTTCTTTTCACTTGCCTTTGTTCATTGTTTTTACTTGTAGATCTTTATGTTCTCTT
TGGCTTATGGTTTATCAACTTTGTTTTTTTTCTTTAACTTAATGGATTATTATATAATCACACACA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_567039 RING/U-box domain-containing protein [Arabidopsis thaliana]12173e-131
XP_002879893 ring-H2 finger C1A [Arabidopsis lyrata subsp. lyrata]10401e-110
NP_565942 ubiquitin-protein ligase RNF115/126 [Arabidopsis thaliana]10158e-108
XP_002323210 predicted protein [Populus trichocarpa]7901e-081
XP_002876373 hypothetical protein ARALYDRAFT_324170 [Arabidopsis lyrata subsp. lyrata]7532e-077

Swiss-Prot top hits (Blast detail)Scoree value
Q0II22 RING finger protein 1262932e-025
Q9BV68 RING finger protein 1262771e-023
Q91YL2 RING finger protein 1262771e-023
Q9Y4L5 E3 ubiquitin-protein ligase RNF1152762e-023
Q6DIP3 RING finger protein 1262752e-023

TrEMBL top hits (Blast detail)Scoree value
Q94AK4 Putative uncharacterized protein At3g5658012172e-131
O22197 At2g4083010155e-108
B9IHK2 Predicted protein7907e-082
B3VWP3 Thioredoxin-related protein (Fragment)6957e-071
B3VWL8 Thioredoxin-related protein (Fragment)6912e-070

Arabidopsis top hits (Blast detail)Scoree value
AT3G56580.2 zinc finger (C3HC4-type RING finger) family protein12332e-135
AT3G56580.1 zinc finger (C3HC4-type RING finger) family protein12188e-134
AT3G56580.3 zinc finger (C3HC4-type RING finger) family protein12188e-134
AT2G40830.2 RHC1A; protein binding / zinc ion binding10252e-111
AT2G40830.1 RHC1A; protein binding / zinc ion binding10252e-111

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
211  50%
 
181  50%

Unigene MembersMember information