RadishBase

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Information for unigene UN28152

FASTA Sequence

Unigene ID: UN28152	Length: 1167	SSR
AGAGAAAAGTATGTTCACAATTGCAATCTTTATTACATATGTACTTTTGCACTTAGTCGTCCACTAAACTGCAACACCAACCCAAA ACAAACATAAAACAATTTAAGACAACAAGAGATAAAACTAAAAGTTAAAGGATATCAAATGTCAATGAATCTTGATTTATAACCAT TCTTGAACATCCGCTTCCAACCAAACTATCATCCTGATCATTCATAAACAATTCCAAGCTGCTCAAATCATTGATATCCCACAAGT TCATCGTATCAACATTGTCGTTGAACTTGGCGTCGTTGTAATTAATGTTATCCCTTGATGAATCATCGGAGGAGAGCCACTTGATG TCAACAATCTCAATTTCATCAAGAAACTTTGAGAACTCATCACTAGGTACTGATGATATGCACGACGAGGTAGACGAAGAAGGTGA AGTGGAGTTACTAATGTTAAAGTTGGCATTATCATCACTAGTATGATGGTGAGCAGAAGAGATGTCCACAAATATCTCATGTGGAG TGAGTAATGGGACTTCATCAATGCAAAATCCATCATCAGTAGAAATTGGTGTGTTGTTCTTTTCCAAATCTTTACCTAGTTGATAT TGTTGTTCTTCTTCTTTTTTAGTTTGTTGATCTTCTTGGTTTGTGTTCTTCTCATCATGAGCTTGTTGTTGCGAACCTTCCAAGAG AGGCTTATGCGTCATAGGGTCAATACCCATCTTCTTTAGCTTTTTCTTTATGTGCGTGTTCCAATGGTTCTTTATTTCATTATCAG TTCTTCCTGGTAAATGAGAGGCAATCTTTGACCATCTATTGCCAAGTTGGGCATGAAGATCAATGACCATTTGTTCTTCATATTCT GATAAAAAGCCTCTTTTTAAATCAGGTCTCAGATAATTTATCCATCTTAATCTGCAGCTTTTACCACACCTCAATAGTCCAGAAAG CTTGGGAAGAGCTCTCCAACAGCAGTGGCCATTGGTGAGGATGAAGTTGATGAGCTTCTTGTCTTCTTCAACAGTCCATGGCCCTT TCTTCAAGCCTACTTTGTCACAACATGGTTGCCTCCCCATCTCTCTCTCTCTCTTACTGTACAAATTTTCTTACTTTATATAGTCT AAGAAATGTGCTCAAATAGATACCTAATATACTTACGATATTGTTGTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_197163 myb domain protein 43 [Arabidopsis thaliana]	1263	1e-136
XP_002871726 hypothetical protein ARALYDRAFT_909643 [Arabidopsis lyrata subsp. lyrata]	1258	4e-136
ACU20065 unknown [Glycine max]	787	2e-081
XP_002265082 PREDICTED: hypothetical protein [Vitis vinifera]	776	3e-080
XP_002887017 hypothetical protein ARALYDRAFT_894261 [Arabidopsis lyrata subsp. lyrata]	770	2e-079

Swiss-Prot top hits (Blast detail)	Score	e value
Q50EX6 Protein ODORANT1	643	4e-066
P80073 Myb-related protein Pp2	556	5e-056
P81394 Myb-related protein 315	536	9e-054
P81393 Myb-related protein 308	523	3e-052
P81395 Myb-related protein 330	519	9e-052

TrEMBL top hits (Blast detail)	Score	e value
Q9SPG7 MYB transcription factor	1263	7e-137
C6TE13 Putative uncharacterized protein	787	1e-081
Q9C7U7 At1g66230	724	2e-074
Q84NI9 Myb51 protein	721	5e-074
Q8H0P2 Myb51 protein	721	5e-074

Arabidopsis top hits (Blast detail)	Score	e value
AT5G16600.1 MYB43 (myb domain protein 43); DNA binding / transcription factor	1264	3e-139
AT1G66230.1 MYB20 (myb domain protein 20); DNA binding / transcription factor	724	1e-076
AT4G22680.1 MYB85 (myb domain protein 85); DNA binding / transcription activator/ transcription factor	654	2e-068
AT4G12350.1 MYB42 (myb domain protein 42); transcription factor	630	1e-065
AT5G14340.1 AtMYB40 (myb domain protein 40); DNA binding / transcription factor	590	5e-061

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	4			100%

Unigene Members	Member information