RadishBase

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Information for unigene UN28286

FASTA Sequence

Unigene ID: UN28286	Length: 999	SSR
GATCTGATGATAACTGAGAATAGAACCGAGTCTATGCGATTTGGAGGAAGTGATAGTAGTAGAGGCTTGTGTTCTGCTGGTCAAAG ACATGGATTTCCTGACAACCATGCTCCTGTCTGGAGACCGCACCGGGGCTTACCAGAACGTGCAGTCACCGTGCTAAGGGCTTGGC TCTTCGATCACTTCTTGCATCCTTATCCAACTGATACAGACAAACTGATGTTGGCTAAACAGACAGGTCTCTCCAGAAATCAGGTA TCGAATTGGTTCATAAACGCACGAGTTAGGGTATGGAAGCCGATGGTGGAAGAGATTCATATGCTAGAGACTCGACAATCTCAGAG ACCTTCTTCTTCTTCTTGGAGAGACGAACGTAACACCACCGCCGTCCTCCCCGATAACAACAACCCTTCTTCCTCCCCGGCTCAAC AAAGGGCTAACAACAACTCATCTCCCGCAAGGCCGGTGCAAAACGACGGCGTTCATGGTACCACCACCAACAATAATAACAACTTT ATGAACGCTGGAAACAGTGGTAGCGGCGGCGCGGTTGGCTTCTCCTACGGTATTGCGTCGTCGAATGTAGCGGGGATGAGTAGCAG CACAAATGGAGGAGTGTCGTCGACGTTAGGGCTTCATCATCAGATTGGGTTGCCGGAGCCTTTTCCGATGACAACTGCTCAGAGGT TTGGACTTGACGGTGGCAGTAGCGGTGGAGGAGGGGAGTCTTACGGTGGTGGCGGTGGGTATGAAGTGCAAAATCGTCAGTTTGGG AGAGACTTTATTGGAGGTAGTAATCCTCAGTTTCTACATGATTTTGTAGGATGAGATTATTATTCGTGTGTTGCTAAAAAAATATG TTTGACGTTTGGCTATATGTATTTGAGATATGGAAAATTGTAATGCAAATGATGTGTATATTTAGAATGTTTTCGTTTTTATTTAT TTTTGTTATTGTTTTCCTTTGACGAATCTCTCTAAGGAATGGGAATTGAAATG

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
CBY05401 REPLUMLESS-like protein [Lepidium appelianum]	1132	1e-121
XP_002870947 hypothetical protein ARALYDRAFT_486980 [Arabidopsis lyrata subsp. lyrata]	1114	2e-119
NP_195823 BEL1-like homeodomain protein 9 [Arabidopsis thaliana]	1067	5e-114
AAN31918 putative homeodomain protein [Arabidopsis thaliana]	1067	5e-114
AAM60839 putative homeodomain protein [Arabidopsis thaliana]	1067	5e-114

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LZM8 BEL1-like homeodomain protein 9	1131	8e-123
Q9SJJ3 BEL1-like homeodomain protein 8	372	8e-035
Q9SW80 BEL1-like homeodomain protein 2	352	2e-032
Q9SJ56 BEL1-like homeodomain protein 1	351	2e-032
Q9FXG8 BEL1-like homeodomain protein 10	347	6e-032

TrEMBL top hits (Blast detail)	Score	e value
B9SV36 Bel1 homeotic protein, putative	527	1e-051
A5AHA1 Putative uncharacterized protein	522	5e-051
C0P859 Putative uncharacterized protein	439	2e-041
A5AWN3 Putative uncharacterized protein	407	1e-037
D4QFI4 BEL1-type homeodomain protein	402	4e-037

Arabidopsis top hits (Blast detail)	Score	e value
AT5G02030.1 RPL (REPLUMLESS); DNA binding / sequence-specific DNA binding / transcription factor	1172	1e-128
AT2G27990.1 BLH8 (BEL1-LIKE HOMEODOMAIN 8); DNA binding / transcription factor	372	7e-036
AT4G36870.1 BLH2 (BEL1-LIKE HOMEODOMAIN 2); DNA binding / transcription factor	352	1e-033
AT4G36870.2 BLH2 (BEL1-LIKE HOMEODOMAIN 2); DNA binding / transcription factor	352	1e-033
AT2G35940.1 BLH1 (BEL1-LIKE HOMEODOMAIN 1); DNA binding / protein heterodimerization/ protein homodimerization/ transcription factor	351	2e-033

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	3			100%

Unigene Members	Member information