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Information for unigene UN28488
| FASTA Sequence |
| Unigene ID: UN28488 | Length: 1338 |
SSR | | GATCTGTCTTCTTCTTCCTCCTCCTCTCTCTCCGCGCTTGAGGTAAGGCGTCGGAGATTAATCACCAAAAGCTCTCGGATCCTCTT
CGTCATGGCGACATCAGGTGGAAGTCCTCCTAAGCCATGGGAACAAGAAGGGAACAACAACGCATCTGCTGGGCCTAAGCCTTTCA
GGCCTCCTTCCAATACCAGCACTGCTGATTCCGTTGAGGCTTCTGGGACAGCGAATCCTGGTGAGCTAGTTTCGTCTGTTAACAGG
ACTAATACAGCTGCTGGTACAATGAATGGACTGAGTAGGCCTGTGCCGAGTAGGCCTTGGGAGCAACAGCAAACCTATGGAAGCAC
TTACGGTGGTGGTTATGGTTCAAACCTAGGTATGACCTCTGGGTATGGGTCTGGTACATATGGTTCAGGACTAGGTGGGTATGGTT
CGTCGTATGGGGGTGGGATGTATGGTGGTAGCAGCATGTATAATAGAGGAGGTTATGGTGGTGGTGGTCTCTATGGGAGTTCAGGT
ATGTATGGTGGTGGTGGTGGGATGTACGGCAGCAGTTTTGGTGGTGGTTATGGTATGGGTATGGGGACAGGGATGGGTATGGGTAT
GGGGATGGGAATGGGGATGAGTCCTTATGGTGGTCAAGATCCAAATGATCCTTTTAATCAGCCTCCATCTCCACCAGGCTTCTGGA
TATCATTTCTCCGTGTGATGCAAGGTGCTGTGAATTTCTTTGGCCGTGTAGCGATGCTGATAGACCAGAACACACAGGCTTTTCAT
ATGTTCATGTCTGCCCTTCTTCAGCTATTTGATCGTGGTGGTATGTTATATGGAGAATTGGCGAGATTTGTATTGTGTATGCTTGG
GGTGAGAACAAAGCCTAGAAAGATGCAGCAACAGCAGCAGCAGCTAGGGCCTAATGGACTCCCTTTACCACACCAGCCACATGGAA
ACCAGAACTACATCGAGGGTCCTAAAGCCGGGGCTGCACCAGGTGGTGGCGGTGGTGGTTGGGATAATGTATGGGGTAACTAAGTT
GCTTCGTTTCTTTAAGCCAAGTCCTTCAACGTTACTCTGAATACACAAATGGTAATCAGTTTGGATATGAGTAGATTGTGCAGCGG
CCTCCTAAGCAGATTGGGTTGTTGTTGTACTAAGGCCTGATGTTTGTTTACAAATCGAGTCTCTTTTTTTGAGTGTTCTGGTTATG
TGATAAACAAGTTGCAGATATTTATGTCGAACTCAGTAAAATGGAAAGTGAAGTTGTAAAAGAGTTTCTAAAAGACATATCTGTTG
TGTATTCATTTAATATTATTGGATTCTTTTCTTCTTTTTACTGGATTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_187412 peroxin 13 [Arabidopsis thaliana] | 1339 | 2e-145 |
| XP_002884657 hypothetical protein ARALYDRAFT_478079 [Arabidopsis lyrata subsp. lyrata] | 1331 | 2e-144 |
| XP_002524578 nucleic acid binding protein, putative [Ricinus communis] | 988 | 1e-104 |
| ACB59355 peroxisome biogenesis factor 13 [Nicotiana tabacum] | 933 | 2e-098 |
| ABK93770 unknown [Populus trichocarpa] | 910 | 1e-095 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P0C5C7 Glycine-rich cell wall structural protein 2 | 209 | 9e-016 |
| A3C5A7 Glycine-rich cell wall structural protein 2 | 209 | 9e-016 |
| O70133 ATP-dependent RNA helicase A | 208 | 1e-015 |
| Q9LUI1 Leucine-rich repeat extensin-like protein 6 | 195 | 4e-014 |
| P10495 Glycine-rich cell wall structural protein 1.0 | 193 | 7e-014 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9SRR0 AT3g07560/F21O3_27 | 1339 | 1e-145 |
| B9SF09 Nucleic acid binding protein, putative | 988 | 7e-105 |
| B9U2H7 Peroxisome biogenesis factor 13 | 933 | 2e-098 |
| A9PBL7 Putative uncharacterized protein | 910 | 8e-096 |
| C6TB39 Putative uncharacterized protein | 891 | 1e-093 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G07560.1 PEX13 (PEROXIN 13); protein binding | 1362 | 2e-150 |
| AT1G74230.1 GR-RBP5 (glycine-rich RNA-binding protein 5); ATP binding / RNA binding | 225 | 1e-018 |
| AT2G36120.1 DOT1 (DEFECTIVELY ORGANIZED TRIBUTARIES 1) | 195 | 3e-015 |
| AT2G32690.4 GRP23 (GLYCINE-RICH PROTEIN 23) | 195 | 3e-015 |
| AT3G22800.1 leucine-rich repeat family protein / extensin family protein | 195 | 3e-015 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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