RadishBase

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Information for unigene UN28504

FASTA Sequence

Unigene ID: UN28504	Length: 1398	SSR
GGAATTTCCCAAACTAAACCTCTTTTTACTTGAATCAATTCATCATCATCACCACCATCTCTGTATTTTGCTTTAATCCCTCTTTT CTTTTTCCAGTAGAGAAACCCTAATTACACCGACCGACTTTGTCCTCTTGTCTGGCCCATTACAGAACCCCCACACTACTCTGCTT TTTTTGCTTTTTTCGTTTTTCTTTTTTTCCCGGGAAAATTGATTTCTTTTTCCTCCTTTCGTCATTATTAGTAGGGAAGGGGAATC AAATCATCTTCTTTTAGTTCTCACCATCTCCCGAGTAAACCCTAGAATCTCCGCTTCTGCGTTTCAAAGGTTAAATCATTGTTAAT TACGTCTAGGGTTTACTCGGTCGCCTCTATCATCACTTAAAGTTTGATCCTTTTGTTCTATAATTCACCTTAAAAGTTTCTATTTT TATTTCTCCTCTCTCTCTCTCTCTCATGGCGGTTTCTGGGTTTCACTACTTGAATTCGCCTTTCGGAGATACGACTTACACAAAGG TGTTCGTCGGTGGCCTTGCTTGGGAGACTCAAAGTGAAGCCCTTCGTCGCCATTTCGAGCAGTACGGTGATATCCTCGAGGCCGTC GTCATTGCTGATAAGAACACTGGCCGATCCAAAGGATACGGTTTTGTGACTTTTAGAGATCCAGAAGCTGCTAGGAGAGCTTGTGC TGACCCAACTCCAGTTATAGATGGTAGACGTGCCAACTGTAATCTTGCTTCCCTTGGCAGACCTCGGCCTCCGTTGCCCTATGCAT TCATGATACCTAACATGCCTGGACGCTTAAGACCTGCTTCCCCCTACATTGGAAATGTGCAGGCCCCTCGTGGTTCACTTTTTGGG AACTATCAGTATCAGCAGCAACCACTTCCATATAACTACCAGCAAGGACTTGTGTATCCTCCTTATGGGGTGGCTGCATATGGACC TGAGTACATGCACACACAGTCACAGGGATTATATGGTCCTCCATACATGGGTCAGCAATACCTTCAGGTCTATGGAGTACCTGGAG CAGTTAATACACCGGTTTATCAATACGGGCAATTAAGTCAGACTGTCCCAGGTGGCCAGAGCTATGCAGCAGTTCAAGGGTACTCG GTTCCAGGAAGCCATGTTCTGCAACTTGGTGGAGGACCAACTGTTAGTGCGATGGCTACTTCATCCATGCCTCCTGCTCTTCAAGC TCCATACCCTCCAGGCCCTGCTCCAGCACAGTCCCATATCATTGTTCATCCCCCTCAGTTTATGCAGAGTAGCAGTTCTGATCAAA CAACAAGTTATCCTTGAAGACTGGAGGAGAAAGGAGCAGAGAAATTGCTATTCAATGTGGCAGCAGAAGGCTTCCTGTTTATTTTT TAAGTCGTCAAGTTATTTATCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
NP_565132 RNA recognition motif-containing protein [Arabidopsis thaliana]	1265	8e-137
XP_002889085 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]	1247	1e-134
XP_002893136 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]	1043	5e-111
AAF16655 putative RNA-binding protein; 16955-18423 [Arabidopsis thaliana]	992	4e-105
NP_564127 RNA recognition motif-containing protein [Arabidopsis thaliana]	980	9e-104

Swiss-Prot top hits (Blast detail)	Score	e value
Q5ZMA3 RNA-binding protein 24	296	8e-026
Q6GQD3 RNA-binding protein 24-A	295	1e-025
Q9I8B3 RNA-binding protein 24-B	295	1e-025
Q76LC6 RNA-binding protein 24	295	1e-025
Q6P8A7 RNA-binding protein 24	295	1e-025

TrEMBL top hits (Blast detail)	Score	e value
Q9S7D7 Putative RNA-binding protein; 16955-18423	992	3e-105
Q8H1N8 At1g20880/F9H16_14	979	8e-104
Q94AY2 At1g20880/F9H16_14	971	7e-103
B9GPN6 Predicted protein	969	1e-102
B9H5W4 Predicted protein	953	9e-101

Arabidopsis top hits (Blast detail)	Score	e value
AT1G76460.1 RNA recognition motif (RRM)-containing protein	1276	2e-140
AT1G20880.1 RNA recognition motif (RRM)-containing protein	980	3e-106
AT1G78260.1 RNA recognition motif (RRM)-containing protein	428	3e-042
AT1G78260.2 RNA recognition motif (RRM)-containing protein	428	3e-042
AT1G22330.1 RNA binding / nucleic acid binding / nucleotide binding	408	7e-040

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


20	2			67%


21	1			33%

Unigene Members	Member information