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Information for unigene UN28560
| FASTA Sequence |
| Unigene ID: UN28560 | Length: 568 |
SSR | | TTTTAGTTTAAATTTATCTAAACAATGACTTCCAATGGTGAAGAAATCGAAGAAGAAGAAGAAGAAATATCAAGAATTGAGAAAGG
CCAAGCCAAAATTTGCCATGGAGGAATTGAGACAGTCATATGTACTTCTCCAAGTATTGTTTGCCTTACGCAAAAGTTGATAGCTG
AGGTGATAGGGACGTATTTTGTAATATTTTCTGGATGTGGAGTGGTGGTAGTGAATGTATTATACGGTGGAACAGTGACGTTTCCG
GGGGTATGTGTGACTTGGGGTCTCATTGTTATGGTTATGATTTACTCTACTGGTCACATTTCTGGTGCACATTTCAATCCTGCCGT
CACCTTCACTTTTGCTATTTTCCGGCGATTTCCCTGGTATCAGGTACCATTGTATATAGGTGCACAACTTGCAGGATCGTTACTAG
CGAGTTTGACATTAAGACTAATGTTCAAAGTAACACCTGAAGCTCACTTCGGAACAACTCCAACTGATTCGGCTGCACGATCTCCA
ATCTAATGTAAGTACAATTGATATCTTTTACTAATGAAACTGACTCCATTTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002868543 hypothetical protein ARALYDRAFT_330314 [Arabidopsis lyrata subsp. lyrata] | 742 | 7e-077 |
| NP_198597 aquaporin NIP [Arabidopsis thaliana] | 730 | 2e-075 |
| NP_198598 putative aquaporin NIP4-2 [Arabidopsis thaliana] | 709 | 5e-073 |
| XP_002868544 predicted protein [Arabidopsis lyrata subsp. lyrata] | 696 | 2e-071 |
| P49173 RecName: Full=Probable aquaporin NIP-type; AltName: Full=Pollen-specific membrane integral protein | 499 | 1e-048 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FIZ9 Putative aquaporin NIP4-1 | 730 | 9e-077 |
| Q8W036 Probable aquaporin NIP4-2 | 709 | 2e-074 |
| P49173 Probable aquaporin NIP-type | 499 | 6e-050 |
| Q0DK16 Aquaporin NIP1-3 | 396 | 5e-038 |
| Q9ATN4 Aquaporin NIP1-1 | 379 | 5e-036 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9GV36 Aquaporin, MIP family, NIP subfamily | 491 | 6e-048 |
| B9HW70 Aquaporin, MIP family, NIP subfamily | 448 | 6e-043 |
| B9SJ48 Nodulin-26, putative | 420 | 1e-039 |
| D2KZ48 Nodulin-26 like intrinsic protein | 406 | 5e-038 |
| C5XL79 Putative uncharacterized protein Sb03g002490 | 399 | 3e-037 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G37810.1 NIP4;1 (NOD26-LIKE INTRINSIC PROTEIN 4;1); water channel | 730 | 9e-078 |
| AT5G37820.1 NIP4;2 (NOD26-LIKE INTRINSIC PROTEIN 4;2); water channel | 709 | 2e-075 |
| AT1G31885.1 transporter | 334 | 7e-032 |
| AT4G18910.1 NIP1;2 (NOD26-LIKE INTRINSIC PROTEIN 1;2); arsenite transmembrane transporter/ water channel | 330 | 2e-031 |
| AT4G19030.1 NLM1; arsenite transmembrane transporter/ water channel | 320 | 3e-030 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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