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Information for unigene UN28596
| FASTA Sequence |
| Unigene ID: UN28596 | Length: 1296 |
SSR | | GGAGCAGAGTATGAAAAAGCTGCCGCCTGATGTTAATGGAGAAGATGGAAATAAACTGTGGCAAAGTTTGGTGGGCCAAACAGGTC
TGACTGCTCAGTTAGTTTCCATTACACGAGAAGTGAGAAATGTACGTGGAAACACCCAGAAAAAGATTGAGAAGCTCAGGCAGCTT
TTAAGTGGACTCCTTAGTGAACTCACCTACTTTGAAGAGCCTATTCGATCACCGCTTACCCCTAGTGTCCTCATAAAAGGGATTGT
GCCCGGAGAATCAACGCTCTTTAAAAGTCAACTGAATCCTCTGCTTCTAGCTTTCCGAACAGAAGACGAAGGAACTTGCAAAGTTA
TATTTAAGAAGGGAGATGATCTCCGGCAAGACCAACTGGTTGTTCAATTGGTTTGGCTCATGGATAGACTGCTTAAGCTAGAAAAT
CTTGATCTTTGCCTAACTCCTTATAAGGTGTTAGCAACTGGACATGACGAAGGCATGTTAGAATTCATACCATCCCGTTCTTTAGC
TCAGATTCTCTCAGAGCACCGAAGCATAACAAGTTATCTGCAGAAGTTCCATCCTGATGAGCATGCTCCTTTCGGGATAACAGCCT
CTTGTCTCGAGACATTTATTAAAAGCTGTGCAGGCTATTCCGTGATCACATATATACTTGGCATTGGAGACAGGCACCTTGACAAC
CTTCTCCTTACAGATGATGGCCGCCTTTTCCACGTTGATTTTTGCGTTTATACTAGGTAGAGATCCTAAACCGTTCCCTCCACCGA
TGAAACTCTGCAAAGAAATGGTGGAAGCCATGGGCGGAGCAGAAAGCCAATACTACACAAGGTTCAAATCGTACTGTTGTGAAGCC
TACAACATTCTCCGGAAATCAAGCAACCTTATTTTGAATCTGTTCTATCTCATGGCGGGTTCAACCATTCCAGATATAGCTTCAGA
TCCTGAAAAGGGCATTCTCAAACTCCAAGAAAAGTTTAGGCTTGATATGGACGACGAAGCATGCATCCATTTTTTTCAAGATCTGA
TTAATGAAAGCGTAAGCGCTCTGTTCCCGCAAATGGTTGAAACCATACACAGGTGGGCTCAATACTGGCGTTGAACCAGTGCGTTG
AAAATGTATATGCTATTTACTTTGTTACGTCAATAACACACACACACACACTCAAAGGTTTGATTTATGTTCTTGGCTTTTACTTA
CATCCACTGTGACAAAACTATTACTCTGTAAATAACCTTGCTAACCTTCAAAGCTAGATTATAGTCACTTAAAAACGAAGCGTTTT
GTCGAG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| AAN62481 phosphatidylinositol 3-kinase [Brassica napus] | 1239 | 8e-134 |
| XP_002886614 ATVPS34 [Arabidopsis lyrata subsp. lyrata] | 1131 | 3e-121 |
| NP_176251 phosphatidylinositol 3-kinase VPS34 [Arabidopsis thaliana] | 1110 | 7e-119 |
| AAL86326 putative phosphatidylinositol 3-kinase [Arabidopsis thaliana] | 1110 | 7e-119 |
| BAD94035 phosphatidylinositol 3-kinase [Arabidopsis thaliana] | 1104 | 3e-118 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P42339 Phosphatidylinositol 3-kinase VPS34 | 1115 | 8e-121 |
| P42347 Phosphatidylinositol 3-kinase, root isoform | 1014 | 4e-109 |
| P42348 Phosphatidylinositol 3-kinase, nodule isoform | 1000 | 2e-107 |
| Q6AZN6 Phosphatidylinositol 3-kinase catalytic subunit type 3 | 581 | 7e-059 |
| Q6PF93 Phosphatidylinositol 3-kinase catalytic subunit type 3 | 565 | 5e-057 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8H1S8 Phosphatidylinositol 3-kinase | 1239 | 5e-134 |
| Q8RXR0 Putative phosphatidylinositol 3-kinase (Fragment) | 1110 | 5e-119 |
| Q56YM3 Phosphatidylinositol 3-kinase (Fragment) | 1104 | 2e-118 |
| B9SH94 Phosphatidylinositol 3-kinase class, putative | 1041 | 5e-111 |
| B9I348 Predicted protein | 1023 | 6e-109 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G60490.1 ATVPS34; 1-phosphatidylinositol-3-kinase/ binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor | 1115 | 7e-122 |
| AT5G09350.1 PI-4KBETA2 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA2); binding / inositol or phosphatidylinositol kinase/ phosphotransferase, alcohol group as acceptor | 204 | 3e-016 |
| AT5G64070.1 PI-4KBETA1 (PHOSPHATIDYLINOSITOL 4-OH KINASE BETA1); 1-phosphatidylinositol 4-kinase | 203 | 4e-016 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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