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Information for unigene UN28610

FASTA Sequence
Unigene ID: UN28610Length: 1102 SSR 
GGGGTCTATCTGATAGTGATTTCGAAACTGAAGATGATGAAAGTGGAGGAGAGGATGATAGTGAGGAAGATGGGGATGAAGGAGAA
GACGATGAGGAGGGATGGGTTGCTGTTCTAGAGGATGAAGATGAAGACGAAGATGATGATGATGAGGATGACTATGATGATGATGA
TGATGATGAAGATGACGACGAATCGCTTGGTGACTGGGCAAAACTGGAAACAATGAGGAGCTGTCATCCCATGTTTTTTGCAAAGA
GAATGTCTGAGGTGGCTTCAAATGATCCTGTAGATTGGATGGATCAGCCGTCTGCTGGGCTTGCCATCCAGGGACTGTTGAGTCAT
ATCTTAGTGGAAGATTATTCAGATATCCAACAGAAACTTGCTGACATAAAATCTACAAGTACCATGGGAGACAAGAATGCTGAAGA
GACTGAGTAGGCAGATGGTGATGATGAATCTGAGAAGACGAGAAAAGTGGTTGCGTTTTACAAGCTGGAGATGATAAGAGTTCAAC
TTATTACAGCGCAAGGGGATCAGACTGAAGTTGAAGTGGAAGATGTCAGAAAAGCACAACCTGATGTTGTTGCTCATGGATCAGCT
GGAATCATAAACCGTTTACAAGAAGCTGGTGATAAACTAGCTGAAGCACTTAGATCTTTGTGTTGGAGATACTACGGTATTCAAGC
TGAGGAAGTGAAGCTGATAGGGTTAGATTCCCTTGGTTTTGACCTCAGGCTTTGCGCAGGAGCAAAGATTGAGTCATTGCGGTTTG
CATTCTCGACAAGGGCAACATCTGAAGATGACGCAGAGGAACAAATAAAAGAACTATTATTCCCGACAAGAGACCCGTCGAAGCCG
CCACTGGGAACAAGTCAGAAGGAGGCTTCTTAGTGCTCTCTAGTGATCGTTTAATGAAACTGCTAGGAGGAAACAGTAATCCAAAC
TGCAAATGCCATTGTCTGTGGGACAAAACATGTACAAGGGTGGGTTGAAGCATTCAATTGATTTTCGACGCTGTAATTGTGGTTTC
TAGTTTTTTGTTTTGTTTTGGGTTTACTTTTGCACAAATTGAGCATTCTAGTTTCAACCCATTCTTTAGC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002877651 hypothetical protein ARALYDRAFT_485272 [Arabidopsis lyrata subsp. lyrata]11402e-122
CAB61996 putative protein [Arabidopsis thaliana]11043e-118
BAF01615 hypothetical protein [Arabidopsis thaliana]11043e-118
NP_190483 pentatricopeptide repeat-containing protein [Arabidopsis thaliana]11043e-118
XP_002877649 hypothetical protein ARALYDRAFT_348010 [Arabidopsis lyrata subsp. lyrata]9287e-098

Swiss-Prot top hits (Blast detail)Scoree value
Q0WMN5 Uncharacterized protein At3g4913511041e-119
Q17RH7 Putative protein TPRXL1837e-013
Q75JC9 Uncharacterized protein DDB_G02716701811e-012
O15417 Trinucleotide repeat-containing gene 18 protein1802e-012

TrEMBL top hits (Blast detail)Scoree value
Q9FLV6 Emb|CAB61996.18792e-092
C0HF20 Putative uncharacterized protein6005e-060
B9H3M6 Predicted protein4081e-037
B9GB31 Putative uncharacterized protein3991e-036
Q2R2Z9 Expressed protein3991e-036

Arabidopsis top hits (Blast detail)Scoree value
AT3G49140.1 EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: EMB2758 (embryo defective 2758) (TAIR:AT4G33990.1); Has 45368 Blast hits to 16108 proteins in 635 species: Archae - 60; Bacteria - 10333; Metazoa - 8211; Fungi - 3499; Plants - 14806; Viruses - 492; Other Eukaryotes - 7967 (source: NCBI BLink).11041e-120
AT5G24060.1 unknown protein8791e-094
AT3G59300.1 unknown protein3503e-033
AT5G63740.1 zinc finger protein-related1693e-012
AT1G48400.1 F-box family protein1542e-010

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  50%
 
72  50%

Unigene MembersMember information