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Information for unigene UN28613
| FASTA Sequence |
| Unigene ID: UN28613 | Length: 1168 |
SSR | | GGAATGGAACTTCTCCATCATTCTTGTCTGTTCCCAAGAAAATCTTGAAAACGAGAAGAAGAAGAAGATGACTCTCTCTAAAGAGA
ATCACTGAAACCTCTGCTCTTTCTTTCTTTTTTTCTCGGATCGAGAGAGATGATTACGAATCCACGTCTCTTGTTCTACTCTTGCA
TTGCAAAAGGAACAGTGATTCTCGCCGAGTTCTCTTCCAAGGACGAGCCAGAGATCGAAGCTCTAGCTTTGCGATGCATCGAGAGC
GTGCCTCCCCATCATTCAATGATCTCTCACACTGTCCGAAAGAGGACATACGCTTTGATCATAGACCGTTCGTTTACGTATCTCGC
CATTTTAGACGAGGCCGTGACGAAAACAGAGTCTCTCTGGCTCTTCAACCGGTTGAAATCAGCCGTGGAGGCTCTGGTTTCAGACG
GATCTGCGTTGGACAACCCGACAAAGCACTGTCTCCAGTCGAAGCTCGATCATGTTTTCGCTGAGATCGCTACTGGTGGTGGTAAT
AACAACAACAAGGATTTGGAACCGGAGTTAGGTTCGGTTGGATCACCGAGGGAGATCAAGAATCCGAGTCTTGATTCATCATCGAA
AGAACGCTCGTTGAAGCCGCTTCTGGCAAAGCCATTGATGGTGTTGAAGAAGAACAAGAAGAGGTTGCGGACGGAGGCTAAGATGG
ATGTGGGAGGAGGAGGAGGAGGTGTGATTAGTAGCAGGGGGTTACCAAGAAACGGATTGATTCATGATCATCATCATAGACAAAAG
GCCGAGCAGATCTGGAAGAAACATGTTTGGGTTGTCTTGATGTTTGATGTCTGTATCTGTGTTGTTCTGTTTGGAATCTGGCTTTG
GGTGTGTCAAGGGTTTCAATGCATCCAAGGGTAGAAGATTACTTATCACTAACTCACTCACTCACTCTTCGTCAACATCAAATCCA
TCATTACAAAAACAGAGCTTCTTCTTTTATGCTGTTATTACTAAGTTATGGTTGAAGCGAATTTTCTTCTTTTTTTTCTAAATCCA
AGGTGTTGTTTCCAGGGTTAAATGCTGGCTTTACACCTTCGTGATGATGTTTACTACTATGTGTTTTTTCTTTGAAGTTTTTCCTT
CATGTTGCAACAGAAAAACAGTGTTTGTAAAAAGTAATGTATCTTTCGTT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867479 hypothetical protein ARALYDRAFT_491998 [Arabidopsis lyrata subsp. lyrata] | 919 | 9e-097 |
| NP_194513 SNARE-like family protein [Arabidopsis thaliana] | 913 | 4e-096 |
| XP_002864212 hypothetical protein ARALYDRAFT_918365 [Arabidopsis lyrata subsp. lyrata] | 509 | 3e-049 |
| XP_002864211 hypothetical protein ARALYDRAFT_495365 [Arabidopsis lyrata subsp. lyrata] | 500 | 3e-048 |
| NP_200111 vesicle-associated membrane protein-like protein [Arabidopsis thaliana] | 485 | 2e-046 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9STP2 AT4g27840/T27E11_80 | 913 | 3e-096 |
| Q9LVV3 Genomic DNA, chromosome 5, P1 clone:MNB8 | 485 | 1e-046 |
| Q84VZ3 At5g52990 | 478 | 8e-046 |
| B9IDQ1 Predicted protein | 380 | 2e-034 |
| B9RSE2 Putative uncharacterized protein | 358 | 7e-032 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G27840.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: transport; LOCATED IN: endomembrane system; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Longin-like (InterPro:IPR011012); BEST Arabidopsis thaliana protein match is: vesicle-associated membrane protein-related (TAIR:AT5G52990.1); Has 165 Blast hits to 165 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 165; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 914 | 1e-098 |
| AT5G52990.1 vesicle-associated membrane protein-related | 485 | 7e-049 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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