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Information for unigene UN28635
| FASTA Sequence |
| Unigene ID: UN28635 | Length: 635 |
SSR | | GGGCTTTCAGCCGCCCAAGTAAGTAAGCTTTCCGATTGAAACCCTTTTTTTGTCAGTAATTCGTTTGGCTGCATTGCATTCAGAAA
TGAACCACCACCACCGTATCCGTATCCAAGAATTGATGGCCACCGGATCCAAGAATGTGGTCCGGAGAACGTTTGCAGCAGCTGGT
AAAGCCAAGAAAGGAGGAGGAGGAGGAGGCGGCGATGGTCCTAAAGGATCGTCTCTGACTCTGAGAAAAGAGATCAAATCCACAAC
CGTTGTCGGTGCCAACACTCTGAAAGATGGATGTGATCCCAAGATCTCTACGGACTCCTCTGATTACCCTGATTGGCTCTGCCGTC
TTCTCCATAACCGACCAGCGCTTAGTGAGCTCAGTAGGAAGAACGTCGAGAACGATGATCTCAAACGTTTTGTCAAGCTCAACACC
CGAGTCCATATCAAGGAGAACAACTCCATCAAGGCCAATAACTGATTTGCTTCCGTACATGTTGCTTCTTAGTTACTACTGTGTTT
GATGCTCTTCTAACTCTTTTATCTTTAATTTTGCATCACTACTACTATTCTCATATTTATTTTGAATGCCAACTCTCTCTCTCTCT
CTCTTTTTTTTGTCTTCAAAAGATAACTTAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_566150 Mitochondrial ribosomal protein L37 [Arabidopsis thaliana] | 399 | 6e-037 |
| XP_002884262 hypothetical protein ARALYDRAFT_896070 [Arabidopsis lyrata subsp. lyrata] | 399 | 6e-037 |
| XP_002298595 predicted protein [Populus trichocarpa] | 327 | 1e-028 |
| XP_002265795 PREDICTED: hypothetical protein [Vitis vinifera] | 325 | 2e-028 |
| NP_196933 Mitochondrial ribosomal protein L37 [Arabidopsis thaliana] | 324 | 3e-028 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9S799 F28J7.7 protein | 399 | 4e-037 |
| B9GJB3 Predicted protein | 327 | 9e-029 |
| A0MFF9 Putative uncharacterized protein (Fragment) | 324 | 2e-028 |
| Q1PDW9 Putative uncharacterized protein | 324 | 2e-028 |
| Q9LYA0 Putative uncharacterized protein F18O22_80 | 323 | 3e-028 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G01740.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37, mitochondrial (InterPro:IPR013870); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G14290.1); Has 117 Blast hits to 117 proteins in 58 species: Archae - 0; Bacteria - 0; Metazoa - 56; Fungi - 22; Plants - 27; Viruses - 0; Other Eukaryotes - 12 (source: NCBI BLink). | 400 | 2e-039 |
| AT5G14290.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Ribosomal protein L37, mitochondrial (InterPro:IPR013870); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G01740.1); Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 4; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 325 | 1e-030 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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