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Information for unigene UN28679
| FASTA Sequence |
| Unigene ID: UN28679 | Length: 1072 |
SSR | | GGGTTTCTTGACAAGGCGTCTCTGGCCATGAAGGAGATGGAGAAGTCTGGGTTGAAACCTGACGTGGTTACGTATACTACGCTTAT
ATCGGCGTTCTACAAGCACGATAGGTATGTGGTTGGCAATGGACTGTGGAACCGTATGGTGCTCAAGGGGTGTAGGCCTAATCTCA
CCACCTTTAATGTTAGGATTCAGTTTTTAGTGAACAGGGGAAGAGCCTGGGATGCAAGTGATCTGTTGATGTTGATGCCAAAACTC
CAGATGGAACCGGACAATGTGACATATAACATGGTCATCAAAGGTTTTTTTGTAGCGGGGTTCCCTGAAATGGCAGAAAGAGTTTA
TACAGCGATGCATGGTAAAGGTTACAAACCCAATGTGAAGATCTACCAGACGATGATACACTATTTGTGTAAGGCGGGAAAGTTTG
ATTTGGGTTATACAATGTGTAAGGATTGTATGAGAAAGAAGTGGTACCCAAACTTGGACACAGTTGGTGTGTTGCTGGACGGGCTT
GTGAAAAAAGGCCAGCTTGATCAAGCCAAGTTGATTATGGGGTTAGTTCACAAACGAGTTCCACCGTTCAGCTCAAAACAGTTACT
CCCCCTTAAAGTCCATTTTGTAACTGTTTTACATGGAGAGTAGTAGAACAAATTTTGCTACGTTTTACACGACTATTGCGGGGCCA
GAGGATTCTCTTTCTTTATCGCCTCCTCAGTTTCTCTTTGTATAGTTGTGGTGGAACTGGAAAATGGATGTTATTAGGAAGCACAT
TAACATCTTCTTGGCAGATTCAAATATATGTTCTTCAATGTCCTCTCTCTCTCTCTCTCTCTCAGGATGTACTGGGAAACTCCGAT
TAATGCTGAGTCCAGAGCGATGCGGCATTCGCAAATCTGTGAACATACCATTAGCATGGTGATGCACACACACACACGTGGCTCGA
ACAATGAATGAGCCAAAAGAAAGGTTGGTTCTATATCAACAATAGCATAATACTTTTTTGCTACAGTAGAGGCAAGAAGAAAATCT
TTTTTTGGGTGAAGATTTAGAAGTTCCACAAACAATATTC
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| GenBank top hits (Blast detail) | Score | e value |
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| XP_002889307 pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | 948 | 3e-100 |
| NP_178132 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 928 | 7e-098 |
| BAC43646 unknown protein [Arabidopsis thaliana] | 924 | 2e-097 |
| AAD55488 Hypothetical protein [Arabidopsis thaliana] | 903 | 5e-095 |
| XP_002517613 pentatricopeptide repeat-containing protein, putative [Ricinus communis] | 741 | 3e-076 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q8GW57 Pentatricopeptide repeat-containing protein At1g80150, mitochondrial | 928 | 3e-099 |
| Q9SXD1 Pentatricopeptide repeat-containing protein At1g62670, mitochondrial | 266 | 2e-022 |
| Q9LQ14 Pentatricopeptide repeat-containing protein At1g62930, chloroplastic | 261 | 6e-022 |
| Q9CAM8 Pentatricopeptide repeat-containing protein At1g63150 | 248 | 2e-020 |
| Q9SXD8 Pentatricopeptide repeat-containing protein At1g62590 | 247 | 3e-020 |
| TrEMBL top hits (Blast detail) | Score | e value |
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| B9RV44 Pentatricopeptide repeat-containing protein, putative | 741 | 2e-076 |
| B9GWC5 Predicted protein | 706 | 3e-072 |
| B9GKW6 Predicted protein | 675 | 1e-068 |
| Q2HUC1 Pentatricopeptide repeat | 618 | 4e-062 |
| A2YWP3 Putative uncharacterized protein | 572 | 9e-057 |
| Arabidopsis top hits (Blast detail) | Score | e value |
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| AT1G80150.1 pentatricopeptide (PPR) repeat-containing protein | 928 | 3e-100 |
| AT1G62670.1 pentatricopeptide (PPR) repeat-containing protein | 266 | 2e-023 |
| AT1G62930.1 INVOLVED IN: biological_process unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: pentatricopeptide (PPR) repeat-containing protein (TAIR:AT1G63130.1); Has 29147 Blast hits to 6292 proteins in 192 species: Archae - 8; Bacteria - 22; Metazoa - 1258; Fungi - 858; Plants - 25291; Viruses - 0; Other Eukaryotes - 1710 (source: NCBI BLink). | 261 | 6e-023 |
| AT1G63150.1 pentatricopeptide (PPR) repeat-containing protein | 248 | 2e-021 |
| AT1G62590.1 pentatricopeptide (PPR) repeat-containing protein | 247 | 2e-021 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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