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Information for unigene UN28691
| FASTA Sequence |
| Unigene ID: UN28691 | Length: 1408 |
SSR | | AGAAGACATTTTCATTGTTGCTCATTTATGCTTATTGTGTTGTTTCCATTATTAATGCAACATTATGAGTCATGACATAGATTTTC
TCCACCTTGAAGGTGTTGTTCTTCCTTTAACAAACCTTGTCTTCATATTCCCAGGAGTCCCAGGCTCAAATCCTTCACCATTATCA
CCTACTTCTTCCTCACCGTTCATCATCTTCTCAACGTCAACACTTCCTCTAGTGGAAGGTCTCTTCCACCGGAAAAACCCTTTACT
CCCACCACCACTCTTCTTCTCCATAAGCCTCTCCAGCTGCATATGCATGGCACCGCACTCACTCTGGAGCCTCAACACATCATCTC
TAAGCCTCTTTATCTCCGCTTGCTGAACATTCATCTCGCGTTTGGACAAGCACTGTGGTCCAGAGCCTGGCTCGGAGTAATGTGAG
CCAGATGGACTCCAGTCAATGTGACGGCTTAGCTTTGTCTGCTCAGTGAACAACACTCTGATGATTGATCTCACTGGTAAACGATC
GTTCTGAGCTGCATGTAGAGCTGCTTCTGGTGATAGCTTTCTGCTATCAATGAGTCTGCACAGTGCCTTCCTTTCTTGCTTCAACA
CCTGAGGATGAGCCTTGAGATATGTATCAACGGCGCGGTACAAGCCATCCTCTGTGGTACGAGCATGGCTAGGCAGAGCTTTGATT
AGTGATATAAACTCCAATAGAGTCAAACCACCGTCAATGGCAGCTTCAGCAAGGTAAGAGTCAACAAGCTTAGCCACTTTAACGAG
AGCGGCACCGGTCTTAACGTCTTCACTGTCTAAACCAACGAACTTCTGCACAAGACGCGTCACGAGCTCAACGTCAAGCAAAGTCC
CGCACGTGTGGCTAAACGAAGGTATCATGAGCTCCTTGAGGGAAGCTTGGTCGAGCTGCCAAGACACTCTGTTTTCAAGCTCCGTT
AAGTAGTTCTGATTGGTTCCGACCATTTTCGCTGTCCTGAGGAGACGGAGGAGGAAGTTGCATGGAACTGAGTCTTTCTCCGGAGG
GAGGATTCCGGTTAGAGTTTCGACGAAAAAGCGTTTCTTCATTACGGAAGACGTAACGCTCTCCGTCGTCGGTGGTGGTGGTGGTG
CCGTGGTGGCGGAGACGTTACCGGAGAGGTCAGGGAGCCACTTGGAAGCGTAATGAGCGATGATGGAGCCGATGACGTCTGGTCGG
ATTCCTTTGGATTTGATGCCGGTGATGGTTTTGACGAAGTAGTTCATGTCTTGGATAGAAGCTTCGTCGAACCAAGAGTAGTACTC
CGTTTCACCGGCGGCGAACGTTTCTTGGTGTTGATCCGGCGGTTGGTTGGCGTAGATGGTGATGGGTTCCGGCGAAGGTGGTTTCT
CCATTTCGTTTTTTTTTTCACCGTGAGCTTCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002885094 phototropic-responsive NPH3 family protein [Arabidopsis lyrata subsp. lyrata] | 1773 | 1e-195 |
| NP_188176 Phototropic-responsive NPH3 family protein [Arabidopsis thaliana] | 1760 | 3e-194 |
| XP_002517554 signal transducer, putative [Ricinus communis] | 1287 | 2e-139 |
| ACU20143 unknown [Glycine max] | 1234 | 3e-133 |
| XP_002303269 predicted protein [Populus trichocarpa] | 1232 | 6e-133 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q682S0 Root phototropism protein 2 | 456 | 2e-044 |
| Q9FKB6 BTB/POZ domain-containing protein At5g48800 | 324 | 5e-029 |
| Q9FMF5 Root phototropism protein 3 | 322 | 8e-029 |
| Q5KS50 Coleoptile phototropism protein 1 | 319 | 2e-028 |
| Q9S9Q9 BTB/POZ domain-containing protein At1g30440 | 290 | 4e-025 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9LRP8 Non-phototropic hypocotyl-like protein | 1760 | 2e-194 |
| B9RUY5 Signal transducer, putative | 1287 | 2e-139 |
| C6TE91 Putative uncharacterized protein | 1234 | 2e-133 |
| B9GWP2 Predicted protein (Fragment) | 1232 | 4e-133 |
| B9P504 Predicted protein | 1222 | 6e-132 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G15570.1 phototropic-responsive NPH3 family protein | 1761 | 1e-196 |
| AT1G52770.1 phototropic-responsive NPH3 family protein | 1074 | 4e-117 |
| AT5G67385.1 protein binding / signal transducer | 459 | 9e-046 |
| AT2G30520.1 RPT2 (ROOT PHOTOTROPISM 2); protein binding | 456 | 2e-045 |
| AT2G30520.2 RPT2 (ROOT PHOTOTROPISM 2); protein binding | 456 | 2e-045 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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