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Information for unigene UN28788
| FASTA Sequence |
| Unigene ID: UN28788 | Length: 1478 |
SSR | | GGATTCGATATGGTAGCAGTTCCATGCAAAAGGACAACATATAATAACAACACTTCACTTTTCCTTTTTCTCTCTCTCTCTCTCTC
TTTCTTTCTTCTCTCCAAGCTTCTTTAATGTCGGCCCTTCAGTGTCTCACTTTCCTCTTCTTGTTTCTTTTCCTTCTCCAAAATGC
CACGTCAGCTTCACCCCTCCCTCTCCGCCGGAGACCGGTTCACAACAACAGCACTCACAGCAACTTCGCTAAGCATCCGCGACGTA
GAGTAGTTTTTCCGGTGAACAGAACTAGCTGCAACTTGTTCGCTGGCGAGTGGGTGCGGGACGAGACGTACCCACTTTACCGGACC
GAGGAATGCGGCAAAGGAATGATAGATCCGGGATTTGATTGTCAGACTTACGGCAGACCTGACTCCGACTATCTTAAGTTCCGGTG
GAAACCTTTCAATTGTGACGTCCCAAGGTTCAATGGGGTGAAGTTTCTACAGAAACTGAGAAACAAAACAGTAATGTTTGTTGGTG
ATTCGTTGGGTAGAAACCAATGGGAGTCGTTGATGTGTATGATCTCTTCATCAGCACCGTTCCTTCGTACAAATCTTATTCATGAA
GATCCTCTCTCTACCTTCAAGATCCTTGATTACAACGTTAAAGTGTCATTCTATAGAGCTCCTTATCTTGTAGACATAGAAAAAAT
TCACGGAAAGACAACTCTTAAACTAGACGAAATCTCTGTCGATGCATCGGACGCTTGGCGGACAGCCGACGTTCTGCTGTTCAACA
CTGGTCATTGGTGGAGCCATACAGGGTCTCTACGAGGGTGGGAGCAGATGGAGACAGGAGGGAGATATTACGGCGACATGGATAGG
TTGGTGGCACTAACAAAAGGACTAAGAACATGGTCTAACTGGGTCGTTCGTTATACCAAGTCTCCTCTCACTAGAGTTTTCTTCCT
CTCCGTCTCACCCACACACTACAATCCAAATGAGTGGACTTCAAGAGCAAAAGCTTCAACGATAGCTCAAGGAGGAAAAAGCTGTT
ACGGACAAACGACACCGTTTAGTGGAACAACGTACCCAACAAGTTCATACGTGAACCAGAAGAAAGTGATTGATGAAGTGGTGAAA
GAGATGAATTCTCATGTTTCTTTGATGGATATATCTATGCTCTCTGCTCTACGAATCGACGGTCATCCTTCCATCTACAGTGGAGA
TCTCAATCCTTCACTAAAGAGATTTCCTGACCGTTCATCGGATTGTAGCCATTGGTGTCTTCCTGGTCTTCCCGATACTTGGAACC
AACTGTTCTATGCTGCTTTGCTGTTGTAAGATTTGACTAATCAAATATCATCCAAATGTATCTATTGAATTTTAGTTTTTGTTTTT
ATTGTATGTTGTTACGTTTTAACTAAACCTATAATCCTGGGGTTCTCTCTGTGACATTTGTTCACTGATTGTTGTTAAGAAATGCA
TCTTAATTAATCAAAA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_565692 trichome birefringence-like 45 protein [Arabidopsis thaliana] | 1920 | 1e-212 |
| XP_002879243 hypothetical protein ARALYDRAFT_901976 [Arabidopsis lyrata subsp. lyrata] | 1871 | 5e-207 |
| XP_002313988 predicted protein [Populus trichocarpa] | 1190 | 4e-128 |
| XP_002277229 PREDICTED: hypothetical protein [Vitis vinifera] | 1169 | 1e-125 |
| XP_002526381 conserved hypothetical protein [Ricinus communis] | 1163 | 6e-125 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| O80872 At2g30010 | 1920 | 7e-213 |
| B9HNE1 Predicted protein | 1190 | 3e-128 |
| B9SK62 Putative uncharacterized protein | 1163 | 4e-125 |
| Q8LEB9 Putative uncharacterized protein | 1156 | 3e-124 |
| Q9LUZ6 Genomic DNA, chromosome 5, P1 clone:MZN1 | 1156 | 3e-124 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G30010.1 INVOLVED IN: biological_process unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF231, plant (InterPro:IPR004253); BEST Arabidopsis thaliana protein match is: PMR5 (POWDERY MILDEW RESISTANT 5) (TAIR:AT5G58600.1); Has 709 Blast hits to 698 proteins in 16 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 709; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 1920 | 4e-215 |
| AT5G58600.1 PMR5 (POWDERY MILDEW RESISTANT 5) | 1161 | 4e-127 |
| AT5G58600.2 PMR5 (POWDERY MILDEW RESISTANT 5) | 824 | 4e-088 |
| AT5G20590.1 unknown protein | 667 | 7e-070 |
| AT5G19160.1 unknown protein | 659 | 6e-069 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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