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Information for unigene UN28805
| FASTA Sequence |
| Unigene ID: UN28805 | Length: 870 |
SSR | | GTATCCGTCGCCTTTGAATTGAATTGAATCTTACTTCTCTCGCATAAATAAATCATATTCCAAGGACACAGCTTTTCTTCATCTTC
TTTCTCTGTCACCGACTCTCCCACCAAGTCTACCTCCTGTCCAGAGATCGTGCTTGAGGGAGTTCCGCATGTCTCAGAGCTGACTT
CTTTAGTTCTAAATCTCAAAACATTTTGTGTGTTAAGTGCCATTTTTGATTGATTGGAAATGAGAAAGCATAGCATCAGAGAATCC
TTGAAATCTTTCTTTGAGCCTCATCTTCATCCTGACAATGCCGAATTGCTCAAAGGAACCAAAACTGAAATAGATGAGAAAGTGAA
TAAAATCTTGGGGATCGTTGAGAGTGGTGACATTGAGGAAGATGAATCCAAGAGAGCAGTGGTTGCAGAGTTGGTGAAAGAATTCT
ACAGAGACTATGAGTCCTTGTATAACCAATACGATGATCTCACGGGTGAGATCAGGAGAAAAGTTCATGGGAAAGGAGAGAACGGG
AGCTCTTCTTCTTCTTCTTCAGGCTCAGACTCTGACTCGGATAAGAAGAGCAAGAGAAACGGTCGTGCTGACAATGACATGATGGA
GTCTTTAAAGAAACAGAACGAAGCTGCTAATCTCGAAATCGCTGATCTGAAAAAGAAGTTAGAAGCAACCGTTGAAGAAAATGAAG
CAGACACCAAGAAACCTTGAAGAAGCTTAAAGAATCAGAAGACATCATTGGAGACTTGAGACTTGAAACTGACAAGTTAGCCACCA
AAAACAAAGAGCTAAACCAGAAACTTGAAGCTGCTGGCGAGAAGGAAACCGATCTGAATCAGAGCTAGATGATGTGAACAAAGAGA
GAGATGGATG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_176615 myosin heavy chain-related protein [Arabidopsis thaliana] | 605 | 1e-060 |
| NP_198994 COP1-interactive protein 1 [Arabidopsis thaliana] | 518 | 2e-050 |
| XP_002509929 Centromeric protein E, putative [Ricinus communis] | 348 | 9e-031 |
| XP_002303631 predicted protein [Populus trichocarpa] | 347 | 1e-030 |
| XP_002271174 PREDICTED: hypothetical protein [Vitis vinifera] | 287 | 1e-023 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9C7V7 At1g64330 | 605 | 9e-061 |
| B9RCP5 Centromeric protein E, putative | 348 | 6e-031 |
| B9GXF7 Predicted protein | 347 | 8e-031 |
| B9GL85 Predicted protein | 285 | 1e-023 |
| A5BWZ1 Putative uncharacterized protein | 185 | 5e-012 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G64330.1 myosin heavy chain-related | 605 | 6e-063 |
| AT5G41790.1 CIP1 (COP1-INTERACTIVE PROTEIN 1); protein binding | 518 | 7e-053 |
| AT2G30500.1 kinase interacting family protein | 118 | 2e-006 |
| AT1G03080.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Prefoldin (InterPro:IPR009053), KIP1-like (InterPro:IPR011684); BEST Arabidopsis thaliana protein match is: kinase interacting family protein (TAIR:AT3G22790.1); Has 169162 Blast hits to 69460 proteins in 2232 species: Archae - 2114; Bacteria - 24914; Metazoa - 82448; Fungi - 11850; Plants - 6375; Viruses - 760; Other Eukaryotes - 40701 (source: NCBI BLink). | 116 | 3e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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