Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN28839

FASTA Sequence
Unigene ID: UN28839Length: 1006 SSR 
GAAAGAAGCCTTCTGTTGTTCGAGAAGAATGTGCATAGCAGTGTTCTCATGGCAATCGCATCCGCTTTACCCTTTTCTTCTCTTTC
TGAATAGAGATGAATATCACAACAGGGAAACGGAGGCGCTGCGTTGGTGGGAAGACGGAGAGACGCTTGGAGGTAGAGACCTCGTC
GGCGGCGGTACGTGGCTCGGTTGCACCAGGAAAGGCCGTATCGCTTTCCTCACCAATTTCAGGGAGACCTCCTCCATCCCCGATGC
TAAATCCCGCGTACATCTCCCTCTTCGTTACTTGCAGAGCGAAAAGAGCCCTGCCGAGTTTGCCCAGGAGATCGAAAAGGAGGCTT
CTCTCTACAACGGCTTCAACCTCCTTGTCGCTCATGTCTTGTCCAAATCCATGTTTTACATTACCCACCGCCCACTCCACGGTGAC
AAGCAGCACCTCGTTACGCTTGTCTCTCCAGGGATCCATGTCCTTTCCAACGCCAACCTCGACTCTCCTTGGCCCAAGTGTCTCAG
GTTGAGAGACGCTTTCAATCAGCTTCTCACCCAAAACCAAGGTGTTGAATTCCCCCTTATGACTATGGTCGAGGAGGTGATGACTG
ATACTGTCAAGGACCAAGAACCTGTCCTGCCTCCCGTTTTCACCCCAGAGATTTAATACCATCTCAGCTCTATCTTCGTCGACATT
CCTAGACCTGCTGTAACATCACCCCCTTCCTTTCCTTTCTTTTCTCCTCTTCCTTTCTTAACTCTCTCATCCACTCTTACTCGTGT
TTCTCACAGGGTCGTTATGGGACCAGAAGCATCTCCGCACTCACCATCAAGTCCCACGGTGAGGTCTGTTTCCTCGAGAGGCATCT
TGAACAAGTGGTTCCTGGAAAGACCACACTCAACACTTTGTTATACAAAATCAATGCTTTACTTGACCCTCTCTCTCTCTCTCTCT
CTTTTTTATAAGTCTTTCACATTTGTAATTTGTGCTTGTATCTACTACATATAGAGAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002868841 hypothetical protein ARALYDRAFT_912278 [Arabidopsis lyrata subsp. lyrata]9492e-100
NP_568038 uncharacterized protein [Arabidopsis thaliana]9465e-100
AAK96872 putative protein [Arabidopsis thaliana]7791e-080
XP_002282835 PREDICTED: hypothetical protein [Vitis vinifera]6956e-071
XP_002328132 predicted protein [Populus trichocarpa]6803e-069

Swiss-Prot top hits (Blast detail)Scoree value
P54797 Ser/Thr-rich protein T10 in DGCR region2535e-021
Q29RZ5 Uncharacterized protein C22orf25 homolog2383e-019
Q6ICL3 Uncharacterized protein C22orf252231e-017

TrEMBL top hits (Blast detail)Scoree value
Q940F5 Putative uncharacterized protein At4g382607798e-081
B9MZ01 Predicted protein (Fragment)6802e-069
C6T8N2 Putative uncharacterized protein5852e-058
Q9SVF9 Putative uncharacterized protein AT4g382605809e-058
C5YE04 Putative uncharacterized protein Sb06g0254305782e-057

Arabidopsis top hits (Blast detail)Scoree value
AT4G38260.1 unknown protein9462e-102
AT1G20730.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF833 (InterPro:IPR008551), F-box associated type 1 (InterPro:IPR017451); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G20740.1); Has 303 Blast hits to 300 proteins in 118 species: Archae - 0; Bacteria - 180; Metazoa - 8; Fungi - 0; Plants - 63; Viruses - 2; Other Eukaryotes - 50 (source: NCBI BLink).2132e-017
AT1G20740.1 unknown protein1801e-013

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
101  50%
 
81  50%

Unigene MembersMember information