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Information for unigene UN28846

FASTA Sequence
Unigene ID: UN28846Length: 1302 SSR 
GCGATTCTTCTTCTTCTGGTGCACCACCGGTTAACTCCAACAAGAACGGAGTAAGCATTGCTAAAGAAGGATGCTTTCCACTATTC
GTTGGAAAGCTTCCCAAGCTTACTGATCTTGGGTTTGAGGATCTAAACCTGTGTAAAGTGTTACATGGGAAGACTTGTTCCTCTGC
CAAAAATGCTGTAGAAAGCCTGGCGACTTATGGAGAAGCTGTTAAAGATTGCTTGGATCTGTTTGAGCTTTTGGAATGTTCAATCT
GCCAGTCAGGAACTCTTCCCATTTGTGACAGAGTCTTTGAAGCCTGCTCTGATGCTTACTTTAGTAGTGATGCCACCAGTGATCAG
GTTATAGTACCGTGTGGAGCAAGGGAAAGCATCATCTGCGGGAAAGCTTCTAAATGGGAGACTAATGGCACAGCCTTCTGCTATGC
AGTGGGTTTCACTGTTGAAGAAGAGCCTTGTTACGGAAGTAAATCATGTCTAGAGGAGCCACCATCTGTGGTGGAAGAACAACAAC
CACTCATCAAAACTGAGTATTCTGCGTGGTTTCATTGGCTTCAGGTCTCTTGGCTAGTAACAGTCCTTGTACTACGAACAATGCTC
TTGAAGAGGTGGCGTGATCATCAGCAGATGCGAGCTATGATCCATAGGATGCGGGAAGAACGATAAGGAACATGAATAGGATTTGC
CTGAAGAGAAGATTTTTAAACTCTTTTTGAGTTCCTTACTTTTAAATAAGCTCTGTAAAAACTCTTTTTTTTAACTTTTACTGTAC
AGAGAGGGTTCAGAAAAGTAAGAACCAAACAATGAAAGTCTATTCAATAATAGAAAGATTAACAAATGTGGTAACTGGATGATACA
AGAAGAGTCAGAAACAATAAGAAGGAAAAAAAAGAAAACAGACCAAAGAAGATGAAAACCTCAAGAAGCAACTATACACAGAATAT
TTTTTGGATAATCTATCTCTCTCTCTCTTGTTTTTACCGATGCTTCTTCTTTGTTGACTAAATAAAGTAGCCTTTGAGGTTCTCTT
CACCATTGCGGTTTTATCTATATGAAGAAAATGCATACAGAGCCTAACTTTAGTAAAGCTTGTGAAACTTTCTTTTATTATTGAGT
TTCAAGACTTGCCCATTTTAGGTACCTTCTTGAGAGGAATACCGCTTGAAGATGGAGCAGGCTTAAGAATCTCAAAAGAACAAACA
AGAGATTGATCTACGCTCAATAAAGCACCTGCATTGTCAAACTCTCCACCATAGTTTGGAGCTGAGAATATCGTCACTAATCTCCT
TTTCGCAAAAAA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002882426 hypothetical protein ARALYDRAFT_896643 [Arabidopsis lyrata subsp. lyrata]4512e-042
XP_002884517 hypothetical protein ARALYDRAFT_896644 [Arabidopsis lyrata subsp. lyrata]2881e-023
NP_187209 serine/threonine-protein phosphatase PP1 isozyme 9 [Arabidopsis thaliana]2862e-023
AAC39461 serine/threonine protein phosphatase type one [Arabidopsis thaliana]2836e-023
NP_851085 serine/threonine-protein phosphatase PP1 isozyme 8 [Arabidopsis thaliana]2836e-023

Swiss-Prot top hits (Blast detail)Scoree value
Q9M9W3 Serine/threonine-protein phosphatase PP1 isozyme 92861e-024
P23777 Serine/threonine-protein phosphatase PP1 (Fragment)2724e-023
O82734 Serine/threonine-protein phosphatase PP1 isozyme 82474e-020
P48490 Serine/threonine-protein phosphatase PP12421e-019
Q3T0E7 Serine/threonine-protein phosphatase PP1-alpha catalytic subunit1936e-014

TrEMBL top hits (Blast detail)Scoree value
B9RFD2 Serine/threonine-protein phosphatase2441e-018
B9N4K0 Serine/threonine-protein phosphatase2225e-016
Q84T16 Serine/threonine-protein phosphatase2225e-016
B9I7C9 Serine/threonine-protein phosphatase2153e-015
A5B7H9 Serine/threonine-protein phosphatase2054e-014

Arabidopsis top hits (Blast detail)Scoree value
AT3G05580.1 serine/threonine protein phosphatase, putative2877e-026
AT5G27840.1 TOPP8; protein serine/threonine phosphatase2842e-025
AT5G27840.2 TOPP8; protein serine/threonine phosphatase2473e-021
AT5G27830.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 46 Blast hits to 46 proteins in 18 species: Archae - 0; Bacteria - 0; Metazoa - 16; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 16 (source: NCBI BLink).2341e-019
AT5G27830.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Folate receptor, conserved region (InterPro:IPR018143); Has 31 Blast hits to 31 proteins in 11 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 0; Plants - 14; Viruses - 0; Other Eukaryotes - 9 (source: NCBI BLink).2341e-019

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  67%
 
101  33%

Unigene MembersMember information