 |
Information for unigene UN28904
FASTA Sequence |
Unigene ID: UN28904 | Length: 1404 |
SSR | | GGAAAAATCGAGACAGAGAGAGAGAGAGAGAGAGGAGAGATATGCAATCCCGTTCCGCACTCGTCGCCTCTCGATTCCTTAGACCG
GCGTCGAGATTCTTCTCCACCTCTTCCTCCCCGATCACTCCCGTCTCCTCCGCAACAACTCAATCCCCCAGGACCCTCGAGTCTCT
CCGAGCGCGGCTGGCGGACGAGTCCCCTTCCCTCACCGACTTCATCCACGGCGACACCTACTCCGTTGAGGTCGGCACCAAGAAGA
AGCCCCTCCCCAAGCCCAAATGGATGAAGGAGTCGATCCCAGGCGGCGAGAGGTACGTCCAGATCATAAAGAAGCTGAGAGACCTC
AACCTCCACACCGTCTGCGAAGAGGCCAAGTGTCCCAACCTCGGCGAGTGCTGGTCCGGCGGCGAAACTGGAACCGCCACCGCGAC
GATTATGATCTTGGGGGATACTTGTACACGTGGCTGCAGGTTTTGTAATGTGAAGACCTCGCGTACGCCTCCTCCTCCTGATCCTA
ACGAACCGAACAATGTCGCTGAAGCTATCGCGTCCTGGGGTGTTGATTATGTAGTCATCACCAGCGTTGATCGTGACGATCTCCCT
GATCAGGGGAGTGGCCATTTTGCCCAAACTGTACAGAGATTGAAAACATTGAAGCCGGAGATGCTTATAGAAGCTCTTGTTCCTGA
TTTCCGAGGAGATGGTGGGTGTGTTGAGAAGGTGGCCAAGTCAGGGCTCGACGTCTTTGCACACAACATTGAGACGGTTGAAGAGC
TTCAGAGTTTTGTGAGGGATCACCGTGCTAACTTTAAGCAGTCGATGGATGTGCTTAGGATGGCTAAGCAGCATGCGCCCGCGGGG
ACCTTGACGAAGACTTCGGTGATGCTGGGATGTGGGGAGACCCCTGATCAAGTTGTCAAGACGATGGAGAAAGTGAGAGCAGCTGG
GGTTGATGTTATGACGTTTGGACAGTACATGCGACCTTCTAAGCGTCACATGCCAGTTGCTGAGTACGTGACACCTGAGGCTTTTG
AGAGATATCGGCTTCTTGGCATGGAAATGGGATTCAGGTACGTGGCATCAGGGCCAATGGTGAGGTCGTCGTACAAAGCAGGAGAG
TACTACATAAAGTCCATGATAGAGGCTGATCGAGTTTCTTCTCCTTCCTCCTCGTAGATACTCATTCCAAGATTTACGCTTTGTGA
ATTCTTTCACTTTATTTGCTTTGTTTATTCTGAAATAATGATTGAGGAGATGTAATACTTACTATGATTGTCATTTGTGTGTTTGC
TCTTTTCTCTCTTACTATCATTCGTCCTTCAGTCTTTCTCTGATGCTATACGACTTTGCTCCATCGTCTAAGCTCAGTTGCGGTGA
TGATATAATAAACCCTTTTTAGTGGTGT
|
|
|
GenBank top hits (Blast detail) | Score | e value |
XP_002884228 hypothetical protein ARALYDRAFT_900465 [Arabidopsis lyrata subsp. lyrata] | 1808 | 9e-200 |
NP_179682 lipoic acid synthase 1 [Arabidopsis thaliana] | 1790 | 1e-197 |
XP_002306361 predicted protein [Populus trichocarpa] | 1595 | 5e-175 |
ABK96318 unknown [Populus trichocarpa x Populus deltoides] | 1585 | 7e-174 |
Q3LSN5 RecName: Full=Lipoyl synthase 2, mitochondrial; AltName: Full=Lipoate synthase 2; Short=LS 2; Short=Lip-syn 2; AltName: Full=Lipoic acid synthase 2; Flags: Precursor | 1580 | 2e-173 |
Swiss-Prot top hits (Blast detail) | Score | e value |
Q5BIP7 Lipoyl synthase, mitochondrial | 993 | 1e-106 |
O43766 Lipoyl synthase, mitochondrial | 992 | 2e-106 |
Q5XIH4 Lipoyl synthase, mitochondrial | 990 | 3e-106 |
Q99M04 Lipoyl synthase, mitochondrial | 979 | 5e-105 |
O13642 Lipoyl synthase, mitochondrial | 923 | 2e-098 |
TrEMBL top hits (Blast detail) | Score | e value |
Q9ZWT1 At2g20860/F5H14.17 | 1790 | 8e-198 |
B9H5L9 Predicted protein | 1595 | 3e-175 |
A9PIW5 Putative uncharacterized protein | 1585 | 4e-174 |
Q3LSN5 Putative lipoic acid synthase | 1580 | 2e-173 |
Q3LSN4 Putative lipoic acid synthase | 1579 | 2e-173 |
Arabidopsis top hits (Blast detail) | Score | e value |
AT2G20860.1 LIP1 (LIPOIC ACID SYNTHASE 1); lipoic acid synthase | 1790 | 4e-200 |
AT5G08415.1 lipoic acid synthase family protein | 992 | 1e-107 |
AT1G44191.1 Encodes a ECA1 gametogenesis related family protein | 129 | 2e-007 |
AT5G38560.1 protein kinase family protein | 122 | 1e-006 |
EST library breakdown for ESTs in the assembly |
Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|