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Information for unigene UN28939

FASTA Sequence
Unigene ID: UN28939Length: 1094 SSR 
GCACGAGGAGCAGGCTCTACTGTTACAGCAGCAAATGCCTTCTGCTCAGTTACACCAAAATCCTATGTCCATGAATCAGCAGCAGC
AAATGTCACAGATGATGCATCAGCAGCAACAATCACAAATGGGCCAGGCTCAGATGAACCAATCCCATCAACAGCAGCAACAACTA
CAGCAGATGCAGCAAAACCAACAGCAGATGCAGCAGCAGCAGCAGATGCCAATAAATCAACAACAGCCATCTCCAAGGATGATGAG
TCATGCAGGTCAGAAGTCTGTTAGTTTAACAGGCTCACAACCAGATGCGACACAGTCCGGTACAACAACACCAGGTGGTAGTTCCA
GCCAAGGAACAGAAGCAACTAATCAACTTCTTGGCAAAAGAAAGATACAGGATCTCGTCTCGCAGGTGGATGCGCATGCTAGATTG
GATCCTGATGTTGAAGACCTCCTTTTGGAGTTAGCGGATGACTTCATTGATTCGGTGACTTCATTTGCTTGTAGCTTGGCTAAGCA
TCGTAAATCATCCATACTGGAACCAAAGGATATATTACTCCACCTAGAGAAAAACTTACACTTGACAGTTCCTGATTCTCAAGTGA
GGATAAACACCAAACAAAAAACGCACCAACTGATCTCCACAAGAAGCGAGTTGCAATGGTGCGTGCTTTGATGGAATCCTCAAAAC
CGGAGACGAATGCGAGCAATTCTAAGGAAACTAATAGACAAGTGATGGTTAACCCAAATGGTCAAAACCATCTCTTAAGACCATCA
CCAAGTTCAGAGCAATTGGTTTCGCAGACATCCGGTCCTCACATGTTACAACATATGACACGCTACTGAAGGACTTCAATACACAA
GTCTATGCTACGTTCATCTTCTTGGTTTCAGGAGTTTACACTTCTATCTATACCAGATATTAAAGAGAGTGAAGGCACAGGGAGTC
GAGTTAAACTGTATGTATATTATATATATGAGTCTTCTAGGCAAACAAATAAAACAGTTATTTCTTCCCATAGTTTGATCTATTTA
ATAGTCACATACAGTACATTGTAATTGATAATGATTTGCATTGAAGTTTTTGGGGATTTATC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002892951 hypothetical protein ARALYDRAFT_471949 [Arabidopsis lyrata subsp. lyrata]7996e-083
AAF79486 F1L3.13 [Arabidopsis thaliana]7163e-073
NP_564023 Transcription initiation factor TFIID subunit A [Arabidopsis thaliana]7136e-073
ACA50283 cytokinin hypersensitive 1 [Arabidopsis thaliana]7136e-073
AAF97312 Unknown protein [Arabidopsis thaliana]7128e-073

Swiss-Prot top hits (Blast detail)Scoree value
O13722 Transcription initiation factor TFIID subunit 122511e-020
Q8VE65 Transcription initiation factor TFIID subunit 122421e-019
Q91858 Transcription initiation factor TFIID subunit 122402e-019
Q16514 Transcription initiation factor TFIID subunit 122392e-019
Q3T174 Transcription initiation factor TFIID subunit 122374e-019

TrEMBL top hits (Blast detail)Scoree value
Q9LNR1 F1L3.137162e-073
B2C6R6 Cytokinin hypersensitive 17134e-073
Q940A7 Putative uncharacterized protein At1g174407134e-073
Q9LQJ7 F28G4.8 protein7125e-073
B9S5R7 Putative uncharacterized protein6249e-063

Arabidopsis top hits (Blast detail)Scoree value
AT1G17440.1 EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor7132e-075
AT1G17440.2 EER4 (ENHANCED ETHYLENE RESPONSE 4); DNA binding / transcription initiation factor7132e-075
AT3G10070.1 TAF12 (TBP-ASSOCIATED FACTOR 12); DNA binding / transcription initiation factor3119e-029
AT1G25540.1 PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator1712e-012
AT1G25540.2 PFT1 (PHYTOCHROME AND FLOWERING TIME 1); transcription coactivator1712e-012

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
151  33%
 
102  67%

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