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Information for unigene UN29276

FASTA Sequence
Unigene ID: UN29276Length: 864 SSR 
GCAAAAAAATGCTTAAAATAATTATAATTTGAATTAAATTTTGAGAACAATACTTTACAAAATGAAAAAATGTCAACGTAACATTT
ATTGTGAAACAAATGAAATATGTAATTACACTCTTATAGTCTTATAGATTTTATTGGTGTTTAAAAAGACAAAGATGAGATAAGAG
GAGTCGCCACCACCACGCACCACAAGACCCTCTCACTAGACTCGATATATATTGTTGACTTTCATTTTCTCTGCACGCAACTTATC
CAAAACGCGGTTTCTACACTTCCACACAAAAGAGCGGAAAAAATATTCTAAAAGTTCAACTTATGCCATTTCCATCAATCTCTTTT
GTTGGAAAATATGCTAAATTCCGAGAGATGAGAAAAGGTATATATTTTTTTCTTTAGAAGATAAAAAACCATTCCATTCTAATTCG
AAAGCTTAACCTAACCGAAACAACAACATACCGGTACACATACAATCAAGTAAGAGAAAGTGTAAAAAGAGATAACCTCAAGAAAA
GCTCTGGTGATGGAAAGTGAACCCAATAGCAATATCCCATCTACTGCAAACGACACGAGTCGAGGAGACATGGCGGCAGGCAAAAT
ACGGCGGGAGGCCCTTTTAGCTCGCTTAGAGACCTTTCTGAACATACTCGTTAAGAATCTGACCAGAAGATCCACACTACTCTCCC
TCTCATCATCATCATCATCTGAAACGACGTCGTATTCGTACCCGTCGAAGAAGAATCGATCGTCCGATTCGTCGTATCTCCTGAGA
GCCACGGTACGAAGCGAGTGGCCGTTTCAATCGGCGGCGGAGGAAGATGGAGTCAAAAGAGAAAGGAGTTTCAGAGACGAATCTAC
GCCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
AAM60951 unknown [Arabidopsis thaliana]3532e-031
NP_564981 short hypocotyl in white light1 protein [Arabidopsis thaliana]3496e-031
XP_002888745 hypothetical protein ARALYDRAFT_894783 [Arabidopsis lyrata subsp. lyrata]3147e-027
XP_002312691 predicted protein [Populus trichocarpa]2601e-020
XP_002520178 conserved hypothetical protein [Ricinus communis]2592e-020

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8LGA9 Putative uncharacterized protein3532e-031
B9HLU1 Predicted protein2609e-021
B9S2F9 Putative uncharacterized protein2591e-020
A5AIN3 Putative uncharacterized protein2563e-020
B9GIN1 Predicted protein (Fragment)2025e-014

Arabidopsis top hits (Blast detail)Scoree value
AT1G69935.1 SHW1 (SHORT HYPOCOTYL IN WHITE LIGHT1)3493e-033
AT4G33780.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; BEST Arabidopsis thaliana protein match is: SHW1 (SHORT HYPOCOTYL IN WHITE LIGHT1) (TAIR:AT1G69935.1); Has 20 Blast hits to 20 proteins in 5 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).1997e-016

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  100%

Unigene MembersMember information