Library    |     Search    |     Batch query    |     SNP    |     SSR  

Information for unigene UN29712

FASTA Sequence
Unigene ID: UN29712Length: 964 SSR 
GGACTCTCCATCACGAAAAAAAAAAAAATCTCGAAGGCGAAAGGCGATTTGGCTCTGACAAAAGAGACCAAAACCCTAATCTATGC
AGGAGGATGATGAATTTGGGCAGGAAGAATCGAATATATGTTTCAAGAACCAAGAGATTCTGGTGGCCACGATCTGGATTCAAGCT
TTCACCGGTACCAATTTCGATTTCTCCACGTACTCCTCGGATTTGAAATCGTTTCTGTAAACGACGTAATGGTCTCATGGAGAAAG
CTCGTCAGCTCTCGATTCTCTGTGGATCCTCCGTAGTGTCCTCTGTAGCTGTCCTCATCGTTTCCTTAACCGGCGATTATGGGATT
GTTAGTTTGTGTTTCACCATTTACTTGACTTTGTCCTGACTTGTAAAACAGAGGAAAGAGCAGTTACAAGATTCTCTCGCCTGACA
TCATGGTGTGGACAATGATTCTGTTAAGCCATCACCAAGACTGGCAAGAAAGGGCGAGAGAGGAAGTGAGGCATGTATTCGGTTTA
GAGTTTTTAGATACTGGTTTGTTTGTTTGTTTGTTTCAGCTCGAAACTGATATGTAAGCTAACGGGTGATACGGTGAACAAGACTG
AGGAACATATTTGGAAGCATATCAATGGACGACGCTTCCTCAACAAGCTAGAGGAGAAAGAAAGAGAGAAAGAGTCTGGTGCTATT
CCAGAGGAAGGTGGAGAAATTGTGGTGAAGGAAGAAAAGAAGAAGAATAAAAAGAAGGAGAAGAAGACTAAGAAGGAGAAGAAGAA
AAACAAGACGTCAGATCACATTCCATGGCGGTTTGTTCTTCCATCTTTGTTTTTATTCTTATAGTATCTTATGCGGGAATGATTTT
GCCGTAGTTCTTCCGGAATTTGAATTATATCCGCTTGCCGACGAGTTTGATTTGTTGCTACTTGCTAATTCATTGTTTCTGTTTCT
GGAATCGATTTTTGAGAC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002873667 hypothetical protein ARALYDRAFT_488286 [Arabidopsis lyrata subsp. lyrata]3246e-028
NP_001031882 Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana]2923e-024
NP_196948 Surfeit locus protein 2 (SURF2) [Arabidopsis thaliana]2923e-024
BAH19752 AT5G14440 [Arabidopsis thaliana]2512e-019
XP_002271099 PREDICTED: hypothetical protein [Vitis vinifera]2502e-019

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q6NPE4 At5g144402922e-024
Q9LY85 Putative uncharacterized protein At5g144402922e-024
B9DG85 AT5G14440 protein (Fragment)2511e-019
B9S673 Putative uncharacterized protein2251e-016
B6TIP1 Surfeit locus protein 2 containing protein2188e-016

Arabidopsis top hits (Blast detail)Scoree value
AT5G14440.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: surfeit locus protein 2 family protein / SURF2 family protein (TAIR:AT5G40570.1); Has 6533 Blast hits to 4299 proteins in 259 species: Archae - 4; Bacteria - 127; Metazoa - 2727; Fungi - 698; Plants - 260; Viruses - 77; Other Eukaryotes - 2640 (source: NCBI BLink).2921e-026
AT5G14440.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Surfeit locus 2 (InterPro:IPR008833); BEST Arabidopsis thaliana protein match is: surfeit locus protein 2 family protein / SURF2 family protein (TAIR:AT5G40570.1); Has 6513 Blast hits to 4273 proteins in 255 species: Archae - 4; Bacteria - 122; Metazoa - 2676; Fungi - 730; Plants - 236; Viruses - 90; Other Eukaryotes - 2655 (source: NCBI BLink).2921e-026
AT5G40570.1 surfeit locus protein 2 family protein / SURF2 family protein1792e-013
AT5G40570.2 surfeit locus protein 2 family protein / SURF2 family protein1792e-013
AT4G19450.1 nodulin-related1362e-008

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
92  100%

Unigene MembersMember information