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Information for unigene UN29978
| FASTA Sequence |
| Unigene ID: UN29978 | Length: 705 |
SSR | | GGACGCGTCTTTCTCTTCGACGACGACGAGTCGGTTTCTCTCTCTCTCTTTCATTCTCTCCTCGACGACTCCGACTCCGCTTGTCT
CTTTCTCTCCCTCGGCGAAACCGCGTCGCCGATGACTCCAGTTCTCTCTTTCTCTCCGTAAACTACTCCCCAAATCTCCTTCCCGG
GCTTCCCCTCTGCTTTCAGCTGGTTTTCGATTCTCCTCATCTCCGATCAAGTTTATAGAGGTTCGAAAGGGTTTTGAAAGGATGGC
ACAACACAATGGCAACGATGAAGTTATGGCCAGTGCTATGGTTGAGATCAATATCAAGACTTTGGATTCTCAAACCCACCCCTTAC
GTGTCGATAAATGTGTCCCTGTTCCCGTTTTGAAGGAGCAAATTGCTTCCGTTACTGGGGTTGTTACAGAACAACAACGCTTGATA
TGTCAGAGGACAAGTAATGAAGGATGATCAACTCCTCTCAGCCTATCGTATCCTTCCTTCTCTTCTTTCTTAGAGCTTTTGTTTTA
TTTATGGACCCTAGTTTCCTCATGAGTTTGTCGAACCCTTGGTTTCGACTTCAGTGTTTGTGGTCTCAGATGAATTAACTGTCTGT
TGTTGTATGTATTTGATTAGATGATATTAGGTTGGTGTTTGGTTGTCTCATTTCTATGTTCAGGACTGTTGTATGTATTTGATCAG
ATGAATTAAGAACCCCT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_197909 ubiquitin-like domain-containing protein [Arabidopsis thaliana] | 230 | 3e-017 |
| CBI21108 unnamed protein product [Vitis vinifera] | 201 | 6e-014 |
| XP_002325171 predicted protein [Populus trichocarpa] | 184 | 6e-012 |
| XP_002331046 predicted protein [Populus trichocarpa] | 181 | 1e-011 |
| XP_002532506 scythe/bat3, putative [Ricinus communis] | 179 | 2e-011 |
| Swiss-Prot top hits | Score | e value |
|---|
| No hits found | | |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9IML5 Predicted protein | 184 | 4e-012 |
| B9N6Y0 Predicted protein | 181 | 9e-012 |
| B9T2N7 Scythe/bat3, putative | 179 | 2e-011 |
| B8B9B8 Putative uncharacterized protein | 177 | 3e-011 |
| B9G058 Putative uncharacterized protein | 175 | 5e-011 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G25270.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: protein modification process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ubiquitin (InterPro:IPR000626); BEST Arabidopsis thaliana protein match is: ubiquitin family protein (TAIR:AT5G42220.1); Has 1533 Blast hits to 627 proteins in 167 species: Archae - 0; Bacteria - 307; Metazoa - 363; Fungi - 153; Plants - 33; Viruses - 41; Other Eukaryotes - 636 (source: NCBI BLink). | 230 | 1e-019 |
| AT5G42220.1 ubiquitin family protein | 112 | 6e-006 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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