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Information for unigene UN30106

FASTA Sequence
Unigene ID: UN30106Length: 1248 SSR 
GGGGGGGGCAAAGATGAATTCGATTTTCTCACGTAGAGTCGTCGTCGACTCATCCTCGCGTCTCACCAAACTGCTCGTGAACCCAG
CAGCTCATTCTCACACACCCAATCACCACTCCTCCTTCACTTCCATCTATCGACCGAGCCAGACTCGCCATTTCCGGACTCGCTAT
CTTCCTTCGACCCCGTCTCCTCCTCCTCCTCCCGCGAGCCGCTGCTTCGACCCTTCTCTCCTATGGCGATCGGAGAAAATTCGTGG
GTTTTTCGCTGGCGCTCTGACGAAAAACAAATCCGTGAAACTGGGGAATCTCGTGGAATCGAAAGTTGTTTTCTTTCGTTCTCAGT
TTCCCGGAAAGGGTTTCGAGTTCGGAGGCTATTCTGGGAGGCGTGGATGGAAGAATTGGCTTCAAGGACTATCATCTAATGACGTT
GTCCTTGGATTACTACTAGCTAACGCTGGTGTCTTTCTCATGTGGCGTGTTTTCGACCAACGTTTCATGATGAATAACTTCATGAT
ATCGTTGGACAATTTCACCAGTGGACGTCTACACACTCTGATAACTTCAGCATTCAGTCATATTGATATTGGGCATATCGTCTCAA
ACATGATTGGTCTCTACTTCTTTGGAACCAGTATCGCAAGAAACTTTGGCCCTCAGTTCCTTCTGAAGCTCTACTTTGCTGGAGCG
CTTGGTGGCTCTGTGTTCTACTTGATTCACCATGCTTATCTTGCTGCCTCATCTCCCAAGGGCCATGGAGCTTTCGTGAGGGATCC
ATCCAGAACCCCGGGACTGGGTGCGAGTGGAGCTGTGAATGCCATCATGCTGCTCGATATCTTCCTGCACCCAAGAGCTACTCTTT
ACCTTGAATTTTTCATTCCAGTTCCCGCAATGCTGCTTGGAATCTTCCTCATTGGTAAAGACATTTTAAGGATAACAGAGTAACAT
CTCAGGTTCTGCTCATTTGGGAGGGGCTGCAGTTGCAGCCATTGCTTGGGCTGGGATTAGGAGAGGTCGCTTCCGTTTCTGAACCT
TTTGACCTAAACAATGCTTGGCTCTGGTCATCTTAGAGAGAGAAAAAAACTATCTTCAAATGATTTAGGAACTTTGAGACCATATT
GTGGCTCACAAGATTATTAGATTCTACCATTTATGTTCTTCCATATATTAATCTTGTCTGTGTTTGTTGCTGCCGAACCTACCTAT
AGACTGATCCGATCCACTTTGGAATATCAACTCTCAACTATATT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_564058 RHOMBOID-like protein 12 [Arabidopsis thaliana]12891e-139
XP_002890288 rhomboid family protein [Arabidopsis lyrata subsp. lyrata]12594e-136
CBI15323 unnamed protein product [Vitis vinifera]8042e-083
XP_002265768 PREDICTED: hypothetical protein [Vitis vinifera]7998e-083
XP_002309495 predicted protein [Populus trichocarpa]7773e-080

Swiss-Prot top hits (Blast detail)Scoree value
P53259 Rhomboid protein 1, mitochondrial1362e-007
O14364 Uncharacterized protein C13E7.111301e-006

TrEMBL top hits (Blast detail)Scoree value
Q9FZ81 F25I16.6 protein12898e-140
B9HDD8 Predicted protein (Fragment)7772e-080
Q3ECD4 Putative uncharacterized protein At1g74130.25943e-059
Q84WG3 Putative uncharacterized protein At1g741305943e-059
B3H707 Uncharacterized protein At1g74140.55631e-055

Arabidopsis top hits (Blast detail)Scoree value
AT1G18600.1 RBL12 (ARABIDOPSIS RHOMBOID-LIKE PROTEIN 12)12993e-143
AT1G74130.2 rhomboid family protein5942e-061
AT1G74130.1 rhomboid family protein5942e-061
AT1G74140.5 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 536 Blast hits to 536 proteins in 206 species: Archae - 2; Bacteria - 298; Metazoa - 30; Fungi - 50; Plants - 36; Viruses - 0; Other Eukaryotes - 120 (source: NCBI BLink).5654e-058
AT1G74140.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: integral to membrane, chloroplast; CONTAINS InterPro DOMAIN/s: Peptidase S54, rhomboid (InterPro:IPR002610); BEST Arabidopsis thaliana protein match is: rhomboid family protein (TAIR:AT1G74130.1); Has 484 Blast hits to 484 proteins in 189 species: Archae - 2; Bacteria - 267; Metazoa - 30; Fungi - 47; Plants - 36; Viruses - 0; Other Eukaryotes - 102 (source: NCBI BLink).5583e-057

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information