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Information for unigene UN30180

FASTA Sequence
Unigene ID: UN30180Length: 1576 SSR 
TTCTCTCTCTCTCTCTCTCCTCTCCGATCAAAGTTTGGAACTTTTTTAAATGGGAAGCGGAAGAGACAGAGACGACCCTTTATCCT
TCACCAGCAACCCATCATCGGCCTCCTCTCCGGTCACTGTATCCGATTACCTCCTCGACAACAACTTTCACGGCGAGCCCACTTCT
CGCTCCGGGAGTTTCCAAAGCGAGAGCTTGCTCGGCGGCGGAGGAGAGAGCAGCAACAACGACGCCGATTTCGGATTCGCTCGTAC
CGATTTCCGATCGGAGCAACTCGCCGGAACCGTTCAGTTCTACGAGAGGCATGTTTTCCTCTGCTACAAAAAGCCTTCCGTGTGGC
CGGCGAGGATCGAGGCGGCCGAGTTCGATCGGTTGCCTAGGCTTCTCTCTGCCGCTGTATCGGCTAGGAAAGGTAGCATGAAGAAA
GAGACTCGGCTCACGATCTGTGAGGGGCATGATGGAACAGAGACATCCAATGGTGATGTGCTGATCTTTCCTGATATGATCAGATA
CAGAAGGCTGACTCATTTTGATGTGGAAACATTTGTGGAAGAGGTGCTTGTGAAGGATGGCGAATGGCTTCCTGGAAATCCTGAAC
TGCTAAAAGGCTCATATGTCTTTGTATGCTCCCATGGATCCCGAGACCGACGATGTGGGGTTTGTGGGCCGCCGTTGGTTAGTAAA
TTCAGAGAAGAACTCGAGTTTTATGGTCTTCAAGGTAAAGTGTCAGTTAGCCCTTGTTCTCACATAGGTGGTCACAAATACGCTGG
GAATGTTATCATCTACCAATCAAAGGTCCACAGGAAAGTCACAGGACACTGGTATGGGTATGTGCAGCCAGATGATGTACATGTTC
TCTTGGAGAAGCATATCATCAAAGGTGAGATTGTAGACCGGCTATGGAGGGGTGAAATGGGTCTATCAGAAGAAGACCAAAAGAAA
ACTCAAGAAAGACGGTTACAGGTAAACGGTGCTGGCCATACGGTTAAGAGCAATGGGAAAGTCACTCAGGAATCATCAGTTCACAG
CGCCGACGCTTCCTGCTGCCAGTCAGAACCTAATGGCTGTTGCCAACAGAATGGGAACAGCTCCTCGTGTTGTCAAGACGAAACTA
TGATGTTGTCTCTGGAAACCTCGGAAGATAATCAGCTTGAAAATGAAAACAACACTGAGAAGCTTACACCTGGAAGGAAAACTGCG
GAAAAGACTTTCTTCAGAATAGATAGTGTCAAAGGATCTTCAACACGTAAGGTTTGCGCAATACCAACATGGTTAGAGAGCTGGGA
GCGAGAAGATACATATGCCGCTCTTGCTGTTGTTTGCGCTGCTGCCTCTGTGGTTGTTGCCTATACTTGCTATAAACAGTTATAAT
GCAAGAAGTTTGTAGCCTAAGATGATTGTGCATCGTGTTTTGTTTCAGCTTTTAAACTACATGTCCCCTTCGTTTCAAGAGGAGGG
TGATGTTATTACTTGTTTGGTAATATGTATCCAGTTTTAACTCTGTACTTCTGCTTTCGCAAGATTAATCGTTTCTGTGTAAAGAT
CTCCCGCTTTAAGCAGATTGAGTTCAGA

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_567751 Sucrase/ferredoxin-like protein [Arabidopsis thaliana]20803e-231
AAL24198 AT4g26620/T15N24_70 [Arabidopsis thaliana]20751e-230
XP_002867555 hypothetical protein ARALYDRAFT_492146 [Arabidopsis lyrata subsp. lyrata]20302e-225
XP_002298877 predicted protein [Populus trichocarpa]14281e-155
XP_002270063 PREDICTED: hypothetical protein [Vitis vinifera]13877e-151

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8LFZ9 Sucrase-like protein20802e-231
Q93Z67 AT4g26620/T15N24_7020758e-231
B9GFY7 Predicted protein14288e-156
B9S9W4 Putative uncharacterized protein13866e-151
Q9FG75 At5g5590011196e-120

Arabidopsis top hits (Blast detail)Scoree value
AT4G26620.1 sucrase-related20925e-235
AT5G55900.1 sucrase-related13058e-144
AT3G27570.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Sucraseferredoxin-like (InterPro:IPR009737), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G40510.1); Has 291 Blast hits to 291 proteins in 98 species: Archae - 6; Bacteria - 47; Metazoa - 0; Fungi - 168; Plants - 40; Viruses - 0; Other Eukaryotes - 30 (source: NCBI BLink).6597e-069
AT5G40510.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 14 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Thioredoxin fold (InterPro:IPR012335), Sucraseferredoxin-like (InterPro:IPR009737), Thioredoxin-like fold (InterPro:IPR012336); BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G27570.1); Has 291 Blast hits to 291 proteins in 101 species: Archae - 6; Bacteria - 54; Metazoa - 0; Fungi - 160; Plants - 40; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).6382e-066

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
211  50%
 
201  50%

Unigene MembersMember information