RadishBase

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Information for unigene UN30210

FASTA Sequence

Unigene ID: UN30210	Length: 1270	SSR
ATGGACGATCTCTCTCTAGAGAAATCGAGATTCCAGGTCCAACACTAGCCTCCCTCATTCAACGAGCGTCCTCCTCTCCCGGCGAC GTCGACGGCTTAATCTTCGGCCAAATCCACCGCATCGTCTCCACTACCTTATCCGACGACTCTCCGGCGCAATCGTCCCCCTCGAT CCCCTCCTCCTCCTCCTCCTCGTCCGATCAAATCGTCGCCACCGTGACGAGCTTCACCTCCTCCGGCAAAACCTTCTCCTTCTACG ACCCCCTCGGCCGAGTCGACTCGCTCCGCATCGACTCCCTCCGAGTCGACTCGCCGGACCGCCTCCTCGGCTGGTTCTCCGCCCGG AGAAAAACCGCCAGCCGCCCCTCCATGCGCGAGCTCTCCGTCTCCTCGTCCCTCTCGTCTCGGTTCCAATCACCGATCGAGAACTC GGAGAACCCTAACTCAACGGCTCCCTCCTCCGTGTTCATCCTTCTCACAACGCCGTCGTCGACGGATCAGCTGATCCACACGCACG AGTACCGCGGGTACCAGTTCCGCGCCGCGAACCGGCGGTTAGAACCGAGATCTCTCGGTATAGTCAACATCGGACCGGCGTTTCGC GGGCACTACGGTTCGTTTAACCCGAAGTCGCGGTTTCCGCCGCTGCTGTGCGAGGTTAGCAGCTCGGCGATGATGAACGAGGACAG GGACGAAGGGTCTCTGAGCGCGAAGAAGGAAGCGGCGAAGGATCAGAAGGAAGTGGATGCGTTGGCGGATGGGTTTCGAGTTGGGG ATTTGAAGCGTTTGGTTGGTGCCGAAGCTGCGAGCTATACGGGCGCGATCGAGGAGATGTATGAGAGGATGCTGGCGAAAGTCGAG AGCTTGGCTTCGGAGGTTGAGAAGAGTTCTGCTAGAGTACTTGAACTGGAAAATCATAATCGGAAGATTAGATACCGAGTTGCCAG AATCGAGCGGTGAAGCTTGTTTCTTTGCTGCCAGATCTTTTGAAAGAGCCAGGATTGGCAGAAGTAGGGGGAACTTTTCCTTCGGA AGAACTTGTTGTGTATTTTGAGGCGTAATCCGGGAACGGAAGATGATGGCTTGAGTTTAACTTTCTCAAGTTCTCTGCTGGAACGT CCTTGTTCAGATAAATGTATTTTTGGCGTATCATCAAATTTTAATGTTTTTTTTTCCTGTTCAGAGAGTTCCTTTTGATGGCTTTT TCAAGTTCCTCATTGCTTCTGGACTGGAAATGAAGTGGCTTTGTGCTTATAATGTAAACTTTCAAA

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884696 hypothetical protein ARALYDRAFT_478180 [Arabidopsis lyrata subsp. lyrata]	1181	4e-127
NP_187490 uncharacterized protein [Arabidopsis thaliana]	1176	2e-126
NP_001030661 uncharacterized protein [Arabidopsis thaliana]	1124	2e-120
AAG51366 hypothetical protein; 78375-76401 [Arabidopsis thaliana]	1119	6e-120
XP_002526681 conserved hypothetical protein [Ricinus communis]	731	6e-075

Swiss-Prot top hits (Blast detail)	Score	e value
Q9C5S0 Classical arabinogalactan protein 9	173	1e-011
Q9FPQ6 Vegetative cell wall protein gp1	169	4e-011
Q6ZCX3 Formin-like protein 6	167	6e-011
Q9C6S1 Formin-like protein 14	165	1e-010
Q84ZL0 Formin-like protein 5	148	1e-008

TrEMBL top hits (Blast detail)	Score	e value
Q8RY09 AT3g08780/F17O14_25	1176	1e-126
Q2V3X5 AT3G08780 protein	1124	1e-120
Q9C9Y2 Putative uncharacterized protein F17O14.25	1119	4e-120
B9SL12 Putative uncharacterized protein	731	4e-075
B9IGH9 Predicted protein	674	2e-068

Arabidopsis top hits (Blast detail)	Score	e value
AT3G08780.1 unknown protein	1177	4e-129
AT3G08780.2 unknown protein	1124	6e-123
AT1G44191.1 Encodes a ECA1 gametogenesis related family protein	180	2e-013
AT2G14890.2 AGP9 (ARABINOGALACTAN PROTEIN 9)	173	1e-012
AT2G14890.1 AGP9 (ARABINOGALACTAN PROTEIN 9)	173	1e-012

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


21	1			50%


19	1			50%

Unigene Members	Member information