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Information for unigene UN30336
| FASTA Sequence |
| Unigene ID: UN30336 | Length: 1343 |
SSR | | GATGAGATTATTAGAGATGATGAAATGATCGGAGATCTGATGAAGAACAACAACAATGGAGACGTCGTGGATAACAACAACAACAA
CAACCGGTTAAGCCGGTGGCATCACAACTCCTCAAGGATCATTAGGGTTTCGAGAGCTTCCGGCGGCAAAGATCGACACAGCAAAG
TCTGGACTTCCAAAGGCCCACGTGACCGGCGTGTCCGGTTATCAGTCTCCACCGCTCTTCAGTTCTACGATCTTCAAGACCGGTTA
GGTCTCGATCAGCCCAGCAAAGCCGTCGAATGGCTAATCAAAGCTGCTGAAGATTCCATCTCCGAGCTCCCTTCGCTCAACAACAC
GAATTTTCCGATGAACAATGACGACGACAATCAGATTCCGACAGGAACTGTTGCTGCTAATTCGTTGTCTAAATCGGCTTGTAGTA
GCAATTCGGACACGAGCAAGAACTCTTCTGGTCTGTCTCTTTCGAGATCGGAGCTGAGGGATAAAGCTAGAGAACGAGCTAGAGAG
AGAACAGCGAAAGAGACCAAGGAGAGAGACCACCACAGTACTACTACTACTACTACTTCGTTTACCGATCTGTTAAATTCCGGTTC
GGATCCGGTTAACGCAAACCGGCAATGGATGGCTCCTTCTTCTTCGTCGCCTCCTCCTCCTATGGAGTATTTCAGCTCGGGTTTGA
TTCTCGGGTCGGGTCAAACCCATTTCCCGATCCAAACAAACTCTCCTCACCCTTTCTCTTCGTCATCACCTCATCAAGAGTTTTCC
TTCGTTCCCGACCAACTGATGTCTCCGGCAGGAGCCAGCGGCTTCAATCTCGACTTTCACATGTCGACGACAACCTCCACCGCCGG
AGCGTTCAGTGGTTTCAACAGGGGGACCCTTCAGTCCAATTCAACAAATCATCAGCATCAGTCTTTTCTAGCTAATCTCCAGAGGT
TTCCATCATCAGAAGGTGGTGGAGGTCCACAGTTCTTGTTCGGTACCGGTGCACTGCCTGCAGAGAATCACCACCTGCATCATCAC
AACAACAATCGCCAGTTTCAGCTTTACTATGAGAATGGACGCAGAAACTCAGACCACAAGGGCAACGGCAAGAACTGATGATGCCT
ATTACCCATTTGCATCTTTTTCTTTATTTGTTTTTTTTTTTTTTGCTTTATTCATCACCCAACTGTCAATCTTCTTCTTGGTTTAT
CTTTTGATTATCATCCTTATTGTGTGTTAAATCTGTTTAGGGGTTTCCCTTTTTGTTTAATGGTCCATTTTGGAAATCTTTTTGAA
TTGGGTTTGTAATGTTGTATTTGTGATAATATCATTTTGTTTGTGGTTTAGTA
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002867999 hypothetical protein ARALYDRAFT_493022 [Arabidopsis lyrata subsp. lyrata] | 1377 | 8e-150 |
| NP_567553 transcription factor TCP2 [Arabidopsis thaliana] | 1375 | 1e-149 |
| CAA16719 teosinte branched1 - like protein [Arabidopsis thaliana] | 1350 | 1e-146 |
| AAC26786 putative basic helix-loop-helix DNA binding protein TCP2 [Arabidopsis thaliana] | 1247 | 1e-134 |
| BAJ33883 unnamed protein product [Thellungiella halophila] | 1154 | 6e-124 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q93V43 Transcription factor TCP2 | 1375 | 6e-151 |
| Q9C758 Transcription factor TCP24 | 402 | 4e-038 |
| Q10CE8 Transcription factor PCF6 | 304 | 9e-027 |
| A2XMN1 Transcription factor PCF6 | 301 | 2e-026 |
| Q9FME3 Transcription factor TCP5 | 282 | 3e-024 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| A0SJS0 TCP family transcription factor | 437 | 6e-041 |
| A2YI86 Putative uncharacterized protein | 423 | 2e-039 |
| Q0D8K4 Os07g0152000 protein | 423 | 2e-039 |
| B9S0X3 Putative uncharacterized protein | 414 | 3e-038 |
| B9HYW5 Predicted protein | 392 | 9e-036 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT4G18390.1 TCP family transcription factor, putative | 1381 | 1e-152 |
| AT4G18390.2 TCP family transcription factor, putative | 1381 | 1e-152 |
| AT1G30210.1 TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); transcription factor | 402 | 3e-039 |
| AT1G30210.2 TCP24 (TEOSINTE BRANCHED1, CYCLOIDEA, AND PCF FAMILY 24); transcription factor | 402 | 3e-039 |
| AT5G60970.1 TCP5 (TEOSINTE BRANCHED1, CYCLOIDEA AND PCF TRANSCRIPTION FACTOR 5); transcription factor | 282 | 3e-025 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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