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Information for unigene UN30384

FASTA Sequence
Unigene ID: UN30384Length: 1344 SSR 
ACAAACCGCGACCGTGTCCGTTCACGGAGTCAGGACAACGAAGGGGTACAAGGCAAACCAGAGGTGCCGATTGTTGTTTACAAAGT
TGGGGAATGTATGCAAGAACTGATTAAGTTGTGGAAGGAATATGAATCATCGCACCCTGACAAAAGTGGTGATTTCGCAAGTAATG
GTCCCACTCTCGAAGTTCGGATTCCAGCTGAGCATGTTACTGCTACTAATCGCCAAGTAAGAGGTGGCCAGCTATGGGGAACAGAT
ATATACACAGATGATTCCGACCTTGTTGCTGTTCTCATGCATACAGGTTACTGTCGTCCCACAGCTTCCCCTCCTCCACCGACAAT
GCAAGAGTTGCGTGCAACCATCCGAGTCTTGCCGTCACAAGAATACTACACCTCCAAGCTGAGGAACAATGTTCGCTCTCGAGCAT
GGGGAGCTGGAATCGGATGCAGTTACAGAGTTGAGAGGTGCTATATACTGAAGAAAGGAGGTGGTACTATTGAACTCGAACCTTCT
CTTACCCACTCCTCAACTGTTGAGCCAACACTTGCCCCAATGGCTGTTGAGAGGTCTATGACCACCAGAGCTGCAGCTTCGAATGC
TCTACGGCAACAAAGGTTTGTTCGAGAAGTAACAATACAATACAACCTCTGCAATGAACCTTGGATCAAGTATAGCATAAGCATTG
TGGCCGATAAGGGTCTCAAGAAGCCTCTCTTCACCTCTGCCCGCTTGAAGAAAGGGGAAGTTTTGTACTTAGAAACACACTCATGC
AGGTATGAGCTCTGTTTCGCGGGAGAGAAGACTATGAAAGCATTCCAAGCCTCACAACAACAACAACACTCGTCACAAGAAGCTAT
GGAGATCGATAACAACAATAACAACAAGTCGCAGAACCATCTTCCTTCTTCAAACGGTGACAAAACAGAATCAGACAACAGTATAA
TTGATGTTTTCCGTTGGTCGAGATGTAAGAAACCTCTCCCGCAGAAGCTTATGCGGTCTATCGGGTTTCCACTCCCACCAGATCAT
GTCGAGGTGTTGGAGGAGAATCTTGATTGGGAAGATGTACAGTGGTCACAGACTGGTGTTTGGATTGCTGGAAAAGAGTACACTCT
TGCTCGCGTGCATTTCTTGGCTCCCAATTAAATAAAAAAAACACTTTCATGTTTAATGTGTCTGTCTTTATTTGATCTTTATCTAC
TGTTAAGACTTAAAGAGATTAATGGTTGCTTTGATGTGTCTTGTGTTCTTCCTGTTTTTATTTTTGTTTTGTAAACTTTTTTTTAA
GTCGAATGATTTTAGTTGTTAATTTTGTAATAGAGATAATCAAATCCATTGGAT

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_196462 uncharacterized protein [Arabidopsis thaliana]18795e-208
XP_002873360 hypothetical protein ARALYDRAFT_487684 [Arabidopsis lyrata subsp. lyrata]18634e-206
XP_002468702 hypothetical protein SORBIDRAFT_01g050500 [Sorghum bicolor]12926e-140
XP_002267563 PREDICTED: hypothetical protein [Vitis vinifera]12433e-134
XP_002305354 predicted protein [Populus trichocarpa]12173e-131

Swiss-Prot top hits Scoree value
No hits found  

TrEMBL top hits (Blast detail)Scoree value
Q8RWV9 Putative uncharacterized protein At5g0845018793e-208
C5WMW0 Putative uncharacterized protein Sb01g05050012924e-140
B9H438 Predicted protein12172e-131
B9IP09 Predicted protein11894e-128
B8B602 Putative uncharacterized protein11204e-120

Arabidopsis top hits (Blast detail)Scoree value
AT5G08450.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 32702 Blast hits to 18312 proteins in 878 species: Archae - 45; Bacteria - 1760; Metazoa - 16233; Fungi - 3347; Plants - 1326; Viruses - 208; Other Eukaryotes - 9783 (source: NCBI BLink).18801e-210
AT5G08450.2 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 32702 Blast hits to 18312 proteins in 878 species: Archae - 45; Bacteria - 1760; Metazoa - 16233; Fungi - 3347; Plants - 1326; Viruses - 208; Other Eukaryotes - 9783 (source: NCBI BLink).18801e-210
AT5G08450.3 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Histone deacetylation protein Rxt3 (InterPro:IPR013951); Has 32702 Blast hits to 18312 proteins in 878 species: Archae - 45; Bacteria - 1760; Metazoa - 16233; Fungi - 3347; Plants - 1326; Viruses - 208; Other Eukaryotes - 9783 (source: NCBI BLink).18801e-210

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
211  50%
 
191  50%

Unigene MembersMember information