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Information for unigene UN30429
| FASTA Sequence |
| Unigene ID: UN30429 | Length: 1160 |
SSR | | CACTGTTCTCTACTGCACCACCACCACCACCACCACCACCACCACGTCCTTTTCGACTCCCGCTGCGACTAGTGCACCATCTTCCT
CAGCTGCAGCTTCTACAACGACGTTCCCTTCTTTTGGTGTGGGCTCATCTGCAGCCAACACTACTACGGCTACTTCCCCTGCTCCA
GCATTTGGTTTTACCACCTCTACTTCTGCTGCTGCAACTACTACTTTTGCTGTACCCCAGGCAGCATCAACTACTGCTACTACGAC
GCAGACATCACTTGTTGTGGCTTCGACTAGTGGGACAAGCACAACAACTGTTGCAGCTCCACTGGCTGGTGCTCCCAAATTGCCAT
CTGAAATAACTGGCAAAACTGTTGAGGAGATTATCAAGGAGTGGAATACTGAGCTAGAAGAGCGTACAGGGAGATTCCGGAAACAG
GCAAATGCAATTGCTGAATGGGATAAGCGGATCCTGCAGAACCGTGATGTTCTTTTGAGGCTTGAGATTGAAGTTGCAAAAGTGGT
TGAAACACAGTCTAGTTTGGAGCGACAGCTGGAATTAATTGACACTCATCAACAAGAGGTTGACAAAGCTTTGAAAAGCATGGAGG
AGGAGGCTGAGCGTATATATAATGACGAGCGCAAATCGCTTCTTGACGATGAAGCAGCATCAACAAGAGATGCGATGTATGAACAG
TCTGAGCTTGTGGAAAGAGAACTGGAGCATATGACTGAACAAATCAGATCGATCATTCAATCCGTAAATGCAAATCAGGGTGGAGA
ACTAGAAGCAGTTGATGGGATGAATCCATTGGATGTAGTAGTCAGGATCTTGAACAATCAACTCAGTTCCTTGATGTGGATTGATG
AGAAAGCAGAGGAGTTCTCATCTCGGATTCAAAAGATTGCATCTCAGGGCTCTGGTGGAGACCGTGAACTGATGATGGCTCCAAAG
CACTGGATGTCTTGATACAAATTTTCACGAAATGTCTGATCCTCACTACACAACCTTGAAGATTGTTTACCTTTTGTATCATTTGG
AATTTGGATATTGATTGGTCATGTTTGAAACTCTTTTATTGGTTTGCTGTTGTTATCAGCTTTCATGAACATTGAATTTGAAACTC
TTCTTCTCTTAAAGAAGTATTAATGAACACCGCCTTAAGTGG
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002880150 hypothetical protein ARALYDRAFT_483630 [Arabidopsis lyrata subsp. lyrata] | 1162 | 6e-125 |
| NP_850429 structural constituent of nuclear pore [Arabidopsis thaliana] | 1157 | 2e-124 |
| CBI16624 unnamed protein product [Vitis vinifera] | 987 | 1e-104 |
| XP_002274231 PREDICTED: hypothetical protein [Vitis vinifera] | 985 | 2e-104 |
| XP_002511630 structural constituent of nuclear pore, putative [Ricinus communis] | 944 | 1e-099 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q6S6W0 Glycoprotein gp2 | 184 | 6e-013 |
| P28968 Glycoprotein gp2 | 179 | 2e-012 |
| Q05049 Integumentary mucin C.1 (Fragment) | 154 | 2e-009 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8L7F7 Putative uncharacterized protein At2g45005 | 1157 | 1e-124 |
| B9RD41 Structural constituent of nuclear pore, putative | 944 | 7e-100 |
| B9MV05 Predicted protein | 891 | 1e-093 |
| C0PAK6 Putative uncharacterized protein | 826 | 3e-086 |
| A9SQI5 Predicted protein | 796 | 1e-082 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT2G45000.1 EMB2766 (EMBRYO DEFECTIVE 2766); structural constituent of nuclear pore | 1161 | 3e-127 |
| AT3G10650.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: nucleoporin-related (TAIR:AT5G20200.1); Has 51621 Blast hits to 25162 proteins in 1378 species: Archae - 161; Bacteria - 11485; Metazoa - 15659; Fungi - 10121; Plants - 1099; Viruses - 600; Other Eukaryotes - 12496 (source: NCBI BLink). | 124 | 5e-007 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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