RadishBase

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Information for unigene UN30511

FASTA Sequence

Unigene ID: UN30511	Length: 865	SSR
ATAAGTTCTTGAAGTTACTGATATTATTAAAGTCTCATAACTTAAAGAGAATAAGATCATACCACTCAACCCTAACCCCCTCAGCA ATCTCCTTATCAAACTAGAAACCGCAAGTTTTCGATTTCACATTTTTATAACACAAAGAAAGAAACAAACTACAAACAGACATCCA ATACAGCTTTCTCTTTTTTCTACTTGCTTCTTTTTTTCTTTCTATTAGCTGGGATGCTTAGTAGGGCCTGTACCTTCGGCCTCCTC CTCGGCTACCATCATGATCATCACTGTTCTCTCGCCCTGACCCTCTGCTTGAGCCATTATTCCGGTCACCTCTTCTGGGTCTTTGT GGTGGTGGTGGTGGTGCCATCTGCATACCAGGCTGCTGCAGAACATAGCCAACACGGCCATCAGGAAGAAGCATTGGAACCATTTG CATCCCTGTTGGCATTGATCCTCTACCATAGATCATTGGCTGACTAAAGCTACCGGCAATACCCAAACCAGACCCCATAGCACCAT AAGCAGGCGCAGCAAAACCACCGAATGTGGGAAGCGCAAAAGGAGCAGGTGTAGGTGCAGCACCGTAAGTATAAGAAGAGTCATGT TTCCTTTCAGCTTGGGGCTTAGCAAGCACAACTTCTAGCGGTTGACCGTTGATTTCATATCTCTCAGAATCTTTAACAGCCCTCAG TGCACTAGACCTTTCAGCATAGTGGACGAACCCAAAATCACGCTTTCCACCCTTCCCAGGAGGTGTGACGATTTTAGTCACTTCCC CATGCCTCTGAAAGAGTTCTTTCAGTTGCTCCGTTGAGGTGTTCTCTGGAATGTTCTTCACATAAAGAGCTTTCACCTGAGCAGCA GCAGC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAB62861 similar to nucleolin protein [Arabidopsis thaliana]	976	1e-103
NP_567192 RNA recognition motif-containing protein [Arabidopsis thaliana]	976	1e-103
NP_001190647 RNA recognition motif-containing protein [Arabidopsis thaliana]	976	1e-103
NP_001190648 RNA recognition motif-containing protein [Arabidopsis thaliana]	976	1e-103
XP_002875012 RNA recognition motif-containing protein [Arabidopsis lyrata subsp. lyrata]	968	1e-102

Swiss-Prot top hits (Blast detail)	Score	e value
O43390 Heterogeneous nuclear ribonucleoprotein R	137	1e-007
A5DM21 Polyadenylate-binding protein, cytoplasmic and nuclear	130	7e-007

TrEMBL top hits (Blast detail)	Score	e value
O23093 A_TM018A10.14 protein	976	9e-104
Q9ASP6 AT4g00830/A_TM018A10_14	976	9e-104
B9I936 Predicted protein	730	3e-075
Q2HTD6 RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding EF-hand	640	8e-065
C6TNJ7 Putative uncharacterized protein (Fragment)	602	2e-060

Arabidopsis top hits (Blast detail)	Score	e value
AT4G00830.1 RNA recognition motif (RRM)-containing protein	977	4e-106
AT4G00830.2 RNA recognition motif (RRM)-containing protein	977	4e-106
AT3G52660.1 RNA recognition motif (RRM)-containing protein	461	3e-046
AT3G52660.2 RNA recognition motif (RRM)-containing protein	461	3e-046
AT5G28390.1 RNA recognition motif (RRM)-containing protein	234	6e-020

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


18	2			100%

Unigene Members	Member information