 |
Information for unigene UN30575
| FASTA Sequence |
| Unigene ID: UN30575 | Length: 880 |
SSR | | GCCGACCATTTTCAGACCCAATGGACAACAACAACAACCAGCAATCATCTCCCTCCCCCACCGGAATCACCCCTCCCTTATCCGCA
GTCGGAGGAGCTTCTTACCACCACCTTCTCCAGCAACAGCAACAACAGCTCCAAATGTTCTGGTCCTACCAACGCCAAGAGATCGA
GCAAGTAAACGATTTCAAGAACCATCAGCTCCCTCTCGCTCGCATCAAAAAGATCATGAAAGCCGACGAGGACGTTCGTATGATCT
CCGCCGAAGCACCCATCCTCTTCGCCAAAGCCTGCGAGCTCTTCATCCTCGAGCTCACAATCCGATCCTGGCTTCACGCCGAGGAA
AACAAACGCCGTACGCTTCAGAAGAACGACATCGCCGCCGCCATTACGAGGACGGATATCTTCGACTTCCTCGTCGACATCGTTCC
TAGAGACGAGATCAAGGAAGAGCCGGGGATCGGTGGGATGATGCCTCATCCCACCGTGAGCGGCGTGCCGTACTATTATCCGCCGA
TGGGTGGTCCTGGTGGGATGATGATTGGGAGACCGGCTATGGATCCGAGTGGCGTCTATGTTCAGCCTCCGTCTCAAGCGTGGCAG
AGCGTTTGGCAGACGTCGACGACGACCGGCGATGATGTTTCTTACGGCAGTGGAGGAAGCAGCGGTCAAGGGAATCTCGATGGCCA
AGTTTGAGCACAGAGTTACTACTTCAGATGAATGCATGTTTACTAGACAGCAGATATTAGTCGACTCTGCCTTGGACGTTGGATAT
GTCTGATCGATTACGGCTGAGTTCAGTTTAAAAGGAGATATTGTCTCTCTGTTAACTTATAATGTTATAATTGCGACTATGCCTTT
ACTATATATATATACATCTA
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_190428 nuclear transcription factor Y subunit C-1 [Arabidopsis thaliana] | 1013 | 7e-108 |
| XP_002877619 hypothetical protein ARALYDRAFT_485217 [Arabidopsis lyrata subsp. lyrata] | 992 | 2e-105 |
| BAJ33796 unnamed protein product [Thellungiella halophila] | 921 | 3e-097 |
| XP_002866557 hypothetical protein ARALYDRAFT_496533 [Arabidopsis lyrata subsp. lyrata] | 908 | 1e-095 |
| XP_002322264 predicted protein [Populus trichocarpa] | 897 | 2e-094 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9SMP0 Nuclear transcription factor Y subunit C-1 | 1013 | 3e-109 |
| Q9FMV5 Nuclear transcription factor Y subunit C-4 | 925 | 5e-099 |
| Q8LCG7 Nuclear transcription factor Y subunit C-2 | 537 | 5e-054 |
| Q9ZVL3 Nuclear transcription factor Y subunit C-3 | 534 | 1e-053 |
| Q8L4B2 Nuclear transcription factor Y subunit C-9 | 525 | 1e-052 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9IFC7 Predicted protein | 897 | 1e-094 |
| B9RAE7 Ccaat-binding transcription factor, putative | 874 | 6e-092 |
| A9PFA6 Putative uncharacterized protein | 856 | 7e-090 |
| A5AFH0 Putative uncharacterized protein | 854 | 1e-089 |
| Q2VY18 CONSTANS interacting protein 2a | 854 | 1e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G48590.1 NF-YC1 (NUCLEAR FACTOR Y, SUBUNIT C1); DNA binding / transcription activator/ transcription factor | 1013 | 3e-110 |
| AT5G63470.1 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4); DNA binding / transcription factor | 925 | 4e-100 |
| AT5G63470.2 NF-YC4 (NUCLEAR FACTOR Y, SUBUNIT C4); DNA binding / transcription factor | 925 | 4e-100 |
| AT1G56170.1 NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2); DNA binding / transcription activator/ transcription factor | 537 | 4e-055 |
| AT1G56170.2 NF-YC2 (NUCLEAR FACTOR Y, SUBUNIT C2); DNA binding / transcription activator/ transcription factor | 537 | 4e-055 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
