RadishBase

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Information for unigene UN30684

FASTA Sequence

Unigene ID: UN30684	Length: 716	SSR
TCTCTCTCTCTCGCTCTCTCTGCAATGGCGCGTCTTCTCCTTCGTCTTCTTCAAGAAGCCAATCCTCCGTCGCCGGCCGCGGTAAA CGCCGATCTCATACTCATCATAGCTGCTCTCATCTGTGCACTGATCTGCGTCCTCGGCTTAGTCGCCGTCTCTCGATGCTCCTGGC TCCGACGTATCGCCGCCAGGAACGGCTCCGCCGCGAGTTCTGATCAGAATCCTCAACCGCCGGTGGCTGCGGCCAACAGAGGACTG AAAAAGAAAGTCCTCCGATCGCTGCCGAAGCTCACTTACTCGCCGGATTCTCCTCCGGCGGAGAAACTGGCCGAGTGCGCCATCTG CCTGACGGAGTTCGCCACCGGCGACGAGCTCAGAGTGTTGCCGCAGTGCGGTCACGGTTTCCACGTGTCTTGTATCGACACGTGGC TTGGGTCTCACTCTTCGTGTCCTTCTTGCCGCCAGATCTTGGTGGTTGCCAGGTGTCACAAATGTGGCGGTGTGCCCGGTAGCTCA AGCTCAGGATCCGAATCTGATACCCGGGTCAAGCAACATGAAGATGAACCTAGTAGCCTCTTGGCTTGATTCTTTTCTTTTTCGAC TTTTACACATAACAATAATATATATATAATTAAAAGAGTATTCCTTATCATTTTAGAGGATAATGGTAATCTGTCATATGTAAATA TTTATTTATGTAATGGAAAAGTTAATTC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002887637 hypothetical protein ARALYDRAFT_316562 [Arabidopsis lyrata subsp. lyrata]	779	6e-081
NP_177767 RING-H2 finger protein ATL8 [Arabidopsis thaliana]	777	1e-080
AAM63811 putative RING zinc finger protein [Arabidopsis thaliana]	777	1e-080
NP_173506 RING-H2 finger protein ATL80 [Arabidopsis thaliana]	748	2e-077
XP_002890411 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]	742	1e-076

Swiss-Prot top hits (Blast detail)	Score	e value
Q8LC69 RING-H2 finger protein ATL1R	777	5e-082
Q9LM69 RING-H2 finger protein ATL1B	748	1e-078
Q9ZT49 RING-H2 finger protein ATL4L	414	6e-040
O22755 RING-H2 finger protein ATL2A	402	2e-038
Q6NQG7 RING-H2 finger protein ATL1L	295	4e-026

TrEMBL top hits (Blast detail)	Score	e value
A0MZQ0 Zinc finger protein	698	1e-071
B9R8S1 Putative uncharacterized protein	601	2e-060
A5BH91 Putative uncharacterized protein	572	4e-057
B9GPP9 Predicted protein	568	1e-056
C6TKF9 Putative uncharacterized protein	549	2e-054

Arabidopsis top hits (Blast detail)	Score	e value
AT1G76410.1 ATL8; protein binding / zinc ion binding	777	5e-083
AT1G20823.1 zinc finger (C3HC4-type RING finger) family protein	748	1e-079
AT4G35480.1 RHA3B; protein binding / zinc ion binding	414	6e-041
AT2G17450.1 RHA3A; protein binding / zinc ion binding	403	1e-039
AT3G18773.1 zinc finger (C3HC4-type RING finger) family protein	314	2e-029

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


20	1			50%


18	1			50%

Unigene Members	Member information