RadishBase

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Information for unigene UN30754

FASTA Sequence

Unigene ID: UN30754	Length: 1038	SSR
TAAACATATTCGAGTTCGGATTCTCTGAACTCAGTTTTTCAGCATTTGCTGTGTTTTTTATCTCTGGTTCTTTTGATAATATGGAG ATGTTAAGAGCAAGGGGAAGCAGCACAAACGGCGTCGTTCAAGTCCCCAATCTTTTGCAGAAGTTTTTCGTCATGAGCAACCATTT TTGTCACATAGACTCTGAGCATGGTGAGAATCGGGAAGAGGCAAAGAAGAGAGATGCTGAAGAAGAAGAAGAAGGTAAAGATATCG AGCTAACGTTAGGTCTTTCTCTCAATGGTCAGTTTGGTACGGATCCGAGATCGAGGAAAAGGAAGAGCTTTGAACTGGCTCGATCT TCTTCCATACCGGAAGGTTTCGTCTTCGACGGCCAAGATCCGGCGGAGATATGCGGCAGACGGGAGTTTCGGACATGTTCCAGCTG GATCGTACGCGTTCTCTGCCTGTCAAAACGGAGATCGAGGCGAAGAGGAAGCGACCGGAGAAGACAGAGGTCCAAGCCGAGGCGAA GCCGTTTCTGTCATTTAACGTTCCTCCTCCTCCGACAAAGGAGAATGATGGTTTTCTTGCCCCCGGTCCGGTCAGCGGGAGGGGCA AAAATGGAAACACGACGAAGAAAAAGAACCAAGAAGTTTCGGGGATGGAGAAGGCTAGGAACATTTTAGAAGACATGCCTTGTGTG TCTACGAGGGATGTCGGAGCTGACGGGAAACGTGTGGAGGGGTTTCTTTATTGGTACGGAGGTAGCAAGGAGGAGGTTAAGATAGT GTGTGTTTGCCACGGCAGTTTTCTTTCACCGGCGGAGTTCGTTAGGCACGGCGGTGGCACCGTGGCCGATGGTGGCGATGATGTTA CGAGTAACCCTCTTAGACATATTGTTGTTAAACTTCCCTCTTCTTCTTTGTAGTTCATAATACTCTTTTAGAACCCAATTGTTGTT AAACAAAATATTTTGTTTAATCTGGATTCACATCGAGTTTCTATAAGGTTAATTGTATTATTTTCAAACTTTTTTAAAAACAATTT TAGGGT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002884305 two or more abres-containing gene 2 [Arabidopsis lyrata subsp. lyrata]	548	7e-054
NP_566163 Ninja-family protein AFP4 [Arabidopsis thaliana]	530	9e-052
CAN77669 hypothetical protein VITISV_038107 [Vitis vinifera]	253	1e-019
XP_002277117 PREDICTED: hypothetical protein [Vitis vinifera]	253	1e-019
CBI21211 unnamed protein product [Vitis vinifera]	253	1e-019

Swiss-Prot top hits (Blast detail)	Score	e value
Q9S7Z2 Ninja-family protein AFP4	530	4e-053
Q94F39 Ninja-family protein AFP3	230	2e-018
B1B5D3 Ninja-family protein 1	227	5e-018
B1B5D4 Ninja-family protein 2	224	1e-017
B1B5D5 Ninja-family protein 3	223	2e-017

TrEMBL top hits (Blast detail)	Score	e value
A5C6W0 Putative uncharacterized protein	253	8e-020
B9SNP9 Putative uncharacterized protein	250	2e-019
B9IK84 Predicted protein	238	4e-018
B9H447 Predicted protein	236	8e-018
B9RED1 RNA binding protein, putative	236	8e-018

Arabidopsis top hits (Blast detail)	Score	e value
AT3G02140.1 TMAC2 (TWO OR MORE ABRES-CONTAINING GENE 2)	531	3e-054
AT3G29575.1 AFP3 (ABI FIVE BINDING PROTEIN 3)	230	2e-019
AT3G29575.3 AFP3 (ABI FIVE BINDING PROTEIN 3)	230	2e-019
AT3G29575.4 AFP3 (ABI FIVE BINDING PROTEIN 3)	230	2e-019
AT1G13740.1 AFP2 (ABI FIVE BINDING PROTEIN 2)	216	9e-018

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			100%

Unigene Members	Member information