RadishBase

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Information for unigene UN30773

FASTA Sequence

Unigene ID: UN30773	Length: 1277	SSR
GGAGAGGACGAGATCTTCTCTAGGCTGTCGATTTCATATCTGAACTCAGTGAGAACTACTTGCAAAAAATGGAACATTTTACTTAA AAATCAGATCCTTTTGGGTGAAGCAGCAGAAAGAAGAAAGAAGCACTTCCTGATGCTGGACTCGAAGTCAAAGAGGATCTGTTTGA TGAACTTCGACCTCCTCCGCAAAGACAAAGACGATGGGGAACCATCTATAAAACAAGTAAGCGTACTTGCTCAAATCCAGATCTCC AATGTGTTTCAGTGCGATGGTTTGTTGCTATGCGTCCTTGAGGATGATAGCTCTAGGCTCTTGGTATGGAATCCTTACTTAGGACA AACCACGTGGATCGAACCCAGACACAGCAGTTTCCATAGTTCAGACAGGTTTGCTCTCGGATACAACAACAACAACAACCACAAGA TCCTGAGGATCTCTTCCAACGAAGAACACGTTTTAGGGTTCGAACTCTACGAGTTTAGCTCGAGTTCTTGGAAGGTTCTTGATGAT GTCACAAGCGAACACGTTTTATGGTCTCATGCACACGGCGGCGTCTCTTTGAAGGGAAACACTTATTTTCGTGCGAGTCCTGTAGC TTCCTTCCTCTGTTTCGATTTCACATCAGAGAGCTTTGGACCGCTTCTCCCTCTCCCGCCGTCTCATTCTTACGATGGATTGCATT TTCTGTCTTTCTCTTGCGTTAGAGAGGAGCAGCAGCTCGCCGTGCTGTATCAGCACTGGCAGGCACGTCAGACTATCGAGATTAGC GTCACGGATACGATTGGTCCTGGCGTTGTGTCTTGGACGAAGTTTTTGAGAGTGGTCACTGACTATTGGGTTGACCCTTCTTCTGG GAGTTTTCTCGTTGACGAGGAGAAGAAAATTGCTGTGGTTTTCGTTCTAGAAAGGGTCGGTGCCAGTCGATGTCTCTACCAAACTG CTCACGTCTTCGGACAAGATGGTTACTTCAAATCTGTGAGAATCCGAGAAGCTCATGAACTCGAAAACAAGGTTTCTTCTCCGAAT ATGATTACGAGACGTTTTGCCCCAGTGGTGTGCTCTTCGCATCTTCCAAGCTTACTGCAACTCAACCAACCAGGCTAATGTGGAAA GAATGCGATTGTAGTAGTACATTTGCATCATCTTCTCCTCTCGGATAAATTGCTAATTATGTGCGTTTATATTTTGAATGTTTTGG CCTCTCTTTTGAGACTGTTCATGTCTCTCGTGATATGTAATCAGATTCATCCTCTACTCACTGATTAGTATAC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
AAB65488 unknown protein; 98896-95855 [Arabidopsis thaliana]	571	2e-056
P0CB27 RecName: Full=F-box protein At1g10895	571	2e-056
BAB02540 unnamed protein product [Arabidopsis thaliana]	556	1e-054
NP_188590 F-box protein [Arabidopsis thaliana]	556	1e-054
XP_002893703 predicted protein [Arabidopsis lyrata subsp. lyrata]	554	2e-054

Swiss-Prot top hits (Blast detail)	Score	e value
P0CB27 F-box protein At1g10895	571	9e-058
Q9LJP0 Putative F-box protein At3g19560	556	5e-056
Q9FI48 Putative F-box protein At5g51000	549	3e-055
Q9FVQ9 Putative F-box protein At1g32140	543	2e-054
Q84X17 F-box protein At2g17830	541	3e-054

TrEMBL top hits (Blast detail)	Score	e value
Q058M6 At2g17830	560	3e-055
Q9LSB7 Emb\|CAB10501.1	451	1e-042
Q9CA01 Putative uncharacterized protein T1G12.22	446	5e-042
A0MEV9 Putative uncharacterized protein (Fragment)	408	1e-037
Q9LHQ2 Gb\|AAD03575.1	379	3e-034

Arabidopsis top hits (Blast detail)	Score	e value
AT3G19560.1 F-box family protein	556	4e-057
AT1G66490.1 F-box family protein	554	8e-057
AT5G51000.1 F-box family protein	549	3e-056
AT1G32140.1 F-box family protein	543	1e-055
AT2G17830.1 F-box family protein	541	2e-055

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


12	2			67%


6	1			33%

Unigene Members	Member information