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Information for unigene UN30866
| FASTA Sequence |
| Unigene ID: UN30866 | Length: 1002 |
SSR | | GATATTTCTCGTCTGTTTTGTTGTTTCATTGTTTTGATTCGAGATTACTTGGGGCTTGCTTTAGTGGAATCATCATCAGGAGGCAT
GGAAAACAGGCATGAAGAGGAGGAGAACAATGCTTACAGACCAATGGATACCGTCTTGGCTCCCATCTTCATCCAGATGATGAAAA
ACTCCGCAAGGAACGGAACCACCACCGACATGGATTCACAGCTTCAAGAGATTCTCAGGAGAAGAGGAAGACGTCCCGTTTCCATT
GACCAGCTGCTTCAGGGCATACGTACTGGCTTAACCCTCGCCCCTGCTGATGATGCTGGTAGAGAGAGAGGACGCGTGATCGTCAC
CAATCCCTACAACCAGATCGTCGCTGTCCCTAGCTCTGCTGTTTCCGACACTCTGCCTCCTGTTGTTTCCGGCTCTCTCAGCGAGT
ACTTCATCGGTCCTGAGTTCGAAGCCATGCTTGAGGATTTGACCGAGACTGATCCCAGGAGGTATGGAACGCCTCCGGCTCGGAGA
GATGCTGTTGAGGCTTTGGCTGATGTGATCATCCTACTCCCGGGGATGCAGTGTTTGGTTTGTTTGGATGATCTCGAGATGGGGAC
TGTTGGGAAGCAGATGCCTTGTGAGCACTTCTTTCACAGTTACTGCTTGCTCTACTGGCTTCAGCTTCATAGCTCCTTTCCGGTTT
GTAGGTGTCAGCTACCGACTGTGGAGGACGAGACAAACGGTGGTGGTACTGATGATGGGTCTTCTATTACAAGCAGCAGCCAGGGA
TCTGAGAACAGTGACCAGGAGGAGGAGGAGGATCCCATGGCTGCTTAGCCAAGCCCCCACCTGGTTCTCTAGATAGCAGTAACATT
AGATATCATGAGGCCACCTTAAATAAGATTTTCTTTGTGACTTTGTCTTTACTTGGTTGAATGGCTACTACTGGGCTCTTATCATT
TTGTAATGCTTCTCAAGACTTATCTACCTTTTGGAGAATCCTTTAAGCCGCTTTGT
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002894508 zinc finger family protein [Arabidopsis lyrata subsp. lyrata] | 510 | 2e-049 |
| NP_564693 RING/U-box domain-containing protein [Arabidopsis thaliana] | 496 | 8e-048 |
| NP_200445 RING/U-box domain-containing protein [Arabidopsis thaliana] | 439 | 3e-041 |
| NP_001147077 RING finger protein 126 [Zea mays] | 432 | 2e-040 |
| NP_187951 RING/U-box domain-containing protein [Arabidopsis thaliana] | 407 | 2e-037 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9BV68 RING finger protein 126 | 188 | 2e-013 |
| Q6IRP0 RING finger protein 126-B | 184 | 5e-013 |
| Q91YL2 RING finger protein 126 | 183 | 6e-013 |
| Q0II22 RING finger protein 126 | 181 | 1e-012 |
| Q7T0Q3 RING finger protein 126-A | 180 | 1e-012 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9ZVU8 At1g55530/T5A14_7 | 496 | 5e-048 |
| Q9FM98 Genomic DNA, chromosome 5, P1 clone: MCD7 | 439 | 2e-041 |
| B6SKJ6 RING finger protein 126 | 432 | 1e-040 |
| Q6NMJ8 At3g13430 | 407 | 1e-037 |
| Q9LJE9 Genomic DNA, chromosome 3, P1 clone: MRP15 | 407 | 1e-037 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G55530.1 zinc finger (C3HC4-type RING finger) family protein | 506 | 2e-051 |
| AT5G56340.1 zinc finger (C3HC4-type RING finger) family protein | 439 | 1e-043 |
| AT3G13430.1 zinc finger (C3HC4-type RING finger) family protein | 407 | 6e-040 |
| AT3G13430.2 zinc finger (C3HC4-type RING finger) family protein | 407 | 6e-040 |
| AT3G19950.1 zinc finger (C3HC4-type RING finger) family protein | 295 | 6e-027 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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