RadishBase

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Information for unigene UN31226

FASTA Sequence

Unigene ID: UN31226	Length: 1096	SSR
GGACCCGCGAAGATCAATACACAAATCTAACTCAAGAAATTTTTTTAAAAAATTCGAAGTATTCTCTCCGATGAATAACGATTCTC TAGGAGTGTTTCTATATTAAACTCCGTCTTTCATTTTGATCTTGTTTTTAAGTATTTAAGTTCTTAATTTCCTGTTTCTTGATCTG TTTTTTTTTTTTTCAAAACGATGGGACTTTGCCTCTGTTTGTTAGCAACTCCGGCGACATTGTTGTGGACAACGAGTTTCTTCCGC CACAAATTCTTGATTTTCTAACGCATTGTTTCGTCACATAATCCACTTAGATTCACATTTTAGGTTTTTCATTTCTTCTTGTATTT TACTTTAAAGTTTAAACATCTCAATGTATCCAAAACACGATCAAGAATCAAGATCAAGATCGGCTCCAACAGGTGCAATCAATAAT CAACGGGCTGAGAAAAAGCGTCGTCTAACGTTTGAACAAGTGAATATGTTGGAGAAGAGTTTTGAAGAAGACAACAAACTGGAACC AGAGAGAAAGACTGAGCTAGCTAAAGTGCTTGGATTGCCTAAACGACAAGTTGCTGTTTGGTTTCAGAATCGAAAAGCTCGGTGCA AGGTCAAGCAGATCGAAAGAGATTATGATGTTCTCAAGGCTTGTTATGATTCCCTACTGGCTAAACATGAATTAGTCATCTCAGTG AATGAGAAACTCATATCTAAAGTCTTAACTTTGACTAAGATGCTTCCTCCTGCAACAAACCAAACCCAAAGAAACTTCCAAGTCAA GCTTAACTCTAAAGGCGATGATGAAAGTATGAGCTCTTCCGCTGCTTTAGTTCCATTGGCAAATGACCATTACTTTACCAACGTTG ATGAAACATTCGGCTGGTGGGTTTGGCCATCGAATCTTATGTAAAAATCTGATGATCCAGGACCGATTTAAAGCGCAAGAGAGAGA GAGAGAGACTTAGTATTCCAAGCTTCTGTTCTAAACATGGGCAAATGTTGAATAGACTACAAAACATAGTGTTCATTAGAGAAATA AGAATGTTTCAAAAGCTACTACAATCACTATTTTAAATAAATATATCATATGGAAGTTTCTACT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
BAG50054 transcription factor Homeobox [Lotus japonicus]	355	2e-031
XP_002517348 homeobox protein, putative [Ricinus communis]	351	6e-031
NP_186796 homeobox-leucine zipper protein HAT5 [Arabidopsis thaliana]	337	2e-029
XP_002278872 PREDICTED: hypothetical protein [Vitis vinifera]	337	2e-029
ACU18084 unknown [Glycine max]	337	2e-029

Swiss-Prot top hits (Blast detail)	Score	e value
Q02283 Homeobox-leucine zipper protein HAT5	337	1e-030
Q9XH36 Homeobox-leucine zipper protein HOX5	332	4e-030
Q6ZA74 Homeobox-leucine zipper protein HOX5	332	4e-030
A2X980 Homeobox-leucine zipper protein HOX16	330	7e-030
Q6YWR4 Homeobox-leucine zipper protein HOX16	330	7e-030

TrEMBL top hits (Blast detail)	Score	e value
B3IX27 Transcription factor Homeobox	355	1e-031
B9RUU7 Homeobox protein, putative	351	4e-031
C6T8D2 Putative uncharacterized protein	337	2e-029
B7F510 cDNA clone:002-117-D05, full insert sequence	330	1e-028
Q93XA3 Homeodomain leucine zipper protein HDZ3 (Fragment)	330	1e-028

Arabidopsis top hits (Blast detail)	Score	e value
AT3G01470.1 ATHB-1 (ARABIDOPSIS THALIANA HOMEOBOX 1); DNA binding / protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor	337	9e-032
AT1G69780.1 ATHB13; DNA binding / sequence-specific DNA binding / transcription factor	293	1e-026
AT3G01220.1 ATHB20 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 20); DNA binding / transcription factor	293	1e-026
AT5G15150.1 ATHB-3 (ARABIDOPSIS THALIANA HOMEOBOX 3); DNA binding / sequence-specific DNA binding / transcription factor	282	2e-025
AT5G65310.1 ATHB5 (ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 5); protein homodimerization/ sequence-specific DNA binding / transcription activator/ transcription factor	275	1e-024

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information