RadishBase

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Information for unigene UN31244

FASTA Sequence

Unigene ID: UN31244	Length: 1197	SSR
GGAGAAAACCCTAATTACTCAGATGGCGCTAGAGAATCAATCGGCGGCGGTGAGATTTACCGGGAAGGTGAATTGGTTCAGCGATT CCAAGGGATACGGTTTCATCACCCCCGACGATGAGAGCGAGGAGCTTTTCGTCCACCAGTCCTCCATCGTCTCCGAAGGCTACAGG AGCCTCGCCGTCGACGATCTGGTCGAGTTCGAGATCGCTCAGGGGACCGACGGCAAGACCAAAGCTGTCGAGGTCACCGCTCCGGG CGGCGCTCCTCTCAAAAAGAAGGAGACCAGCTCTCGCGGGAGAACCGGTGGTCGCGGCGGCGGTTGTTACAACTGCGGCAAGGCTG GTCATGTCGCCAAGGATTGCAGCGGCGAGCGAGGGGAGTGTTACACTTGTGGTGATACTGGTCACTTGGCTAGGGATTGCCTTCAG AAACCGAGCGGAGGAGGTGAACGTGTTGGAGGAGGAGGACGTGGAGATGGGTGCTACACTTGCGGTGACACTGGTCACATGGCTAG GGATTGTGTTAAGAAGTCTGGTGGTGAGCGTGTAAGCAGCGGCGCGGTTGGAACTTGCTATACGTGTGGAGGAACTGGTCACATGG CTAGAGATTGTCCGAGCAAGAGACAGACTGGTGGTGGTTGTTACGAGTGTGGTGGTGCTGGTCACATGGCTCGTGATTGTGAGAGG AGAGGAAGTGGTGGAGGAGGAGGAGGAGGTAGAAGCTCTGGTGGTTGTTACGAGTGCGGTGTTGCTGGTCACATGGCTCGTGATTG TGACAGGAGAGGAAGCGGTGGTGGCGGTAGGAAGGCTGGTGGAGGTGGTGGCGAGTGCTACAAGTGCGGTGAAAGTGGTCACTTTG CAAGGGAGTGTTCTGTTGCTTGATTACTTCCTATTCAACGAACAATAAGATGATTATGAATTTGAGTATATTTACTCTTCGTTTTC GTTTTATATCTTTTGCTGATGGGAATGATGAATTCGCCTGGTCCTTTTTTTGTGTTTTCTTTTTGAGTTTTTAAGTACTACCATTA TTATACAATCCTAGCTAGATTTGGTTTCAGATATGGATGTTGTCCTTTTTGATCTTTATTTGCTTATGTCACTTTTGAGTTTCGTG TTTTGTCCTTTCTGTTTCAGTTTATTGCTTTCTTTGTACGGGATGAACTGAAAGTGAAACCCAAGTTTGGTTGGTCGCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ADE80751 cold shock domain protein 1 [Eutrema salsugineum]	921	5e-097
ADE80750 cold shock domain protein 3 [Eutrema salsugineum]	891	2e-093
NP_195326 cellular nucleic acid-binding protein [Arabidopsis thaliana]	883	1e-092
XP_002867041 hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp. lyrata]	844	4e-088
ADN33944 cold-shock DNA-binding family protein [Cucumis melo subsp. melo]	679	6e-069

Swiss-Prot top hits (Blast detail)	Score	e value
P27484 Glycine-rich protein 2	423	1e-040
Q38896 Glycine-rich protein 2b	308	3e-027
Q6S6W0 Glycoprotein gp2	225	1e-017
P47179 Cell wall protein DAN4	220	4e-017
P38739 Cell wall integrity and stress response component 4	213	3e-016

TrEMBL top hits (Blast detail)	Score	e value
O65639 Glycine-rich protein	883	9e-093
C5XT04 Putative uncharacterized protein Sb04g001720	596	2e-059
A5BG48 Putative uncharacterized protein	595	2e-059
Q6YUR8 Cold shock domain protein 1	544	2e-053
C0P2C3 Putative uncharacterized protein	465	3e-044

Arabidopsis top hits (Blast detail)	Score	e value
AT2G17870.1 cold-shock DNA-binding family protein	913	2e-098
AT4G36020.1 CSDP1 (cold shock domain protein 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding	883	5e-095
AT4G38680.1 GRP2 (GLYCINE RICH PROTEIN 2); double-stranded DNA binding / mRNA binding / nucleic acid binding / single-stranded DNA binding	326	2e-030
AT2G21060.1 ATGRP2B (GLYCINE-RICH PROTEIN 2B); DNA binding / nucleic acid binding / zinc ion binding	308	2e-028
AT3G42860.1 zinc knuckle (CCHC-type) family protein	203	4e-016

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information