 |
Information for unigene UN31433
| FASTA Sequence |
| Unigene ID: UN31433 | Length: 952 |
SSR | | GACATGACGGGAGACGAAGGAGCGGTTGCTATTGCGGAGATCGTGAAGCAGTGTCCGTCATTGGAAGATTTCAGGTGTTCGTCTAC
GAGGATTGGTTCGGATGGCGGTGTTGCGCTTGCTGCGGCGCTTGCATCTTGTAGCCGCTTGAAGAAACTTGATCTTCGTGACAACA
TGTTTGGAGTCGAAGGTGGAGTTGCCCTGGCGGAGACCTTGTCAGTGTTGACTGAGTTGACTGAGATCTATATGAGTTACCTGAAC
TTGGAGGATGAGGGAGCAGAGGCACTTTCCGAAGCTCTGATTAAGTCTGCTCCTCGTCATGAAGTTGTGGAGTTGGCTGGGAACGA
TATTACTGTGAAATCCACTGGGAAATTGGCGGAGTGCATCGCCTCGAAACAGTCTCTTTCGAAGCTAAATTTATCTGAGAATGAAC
TGAAAGACGAAGGGACGATCTTGATCGCAAAGGCAGTTGAAAGTCTTGACCAGTTGGTTGAAGTTGATATGAGCACCAACATGATG
AGAAGAGCTGGGGCAAGGGCCTTGGCACAAAGTGTTTTGAAGAAACAGAGTTTCAAGCTTCTGAACATCAATGGGAACTTCATATC
TGAGGAAGGTGTTGACGAGGTGAATGACATGTTTAAGGGCTCCCCGGAAAAGCTTGGTCCTCTGGATGATAATGACCCTGAAGGAG
AAGATTTTGAAGATGAAGACGAAGAAGAGGAAGGTGAAGAAGACAATGAGCTGGAAGCAAAACTCGGAGGTCTGAAAACCAAGCAA
GAGGAGGAATAGGGAGAGGTAACATGAGTTGGTGCTCTTGTTGCTATATTAGGTAGGTTCAGTTTGATCTCTCTCTCTCTTGCACT
CTTTCTGGTTAACGTATTTTTAGTAATGTAAGGAAGGATCTAAGAGTGTCTTTTGATGATCTATTTACTTGAAATTAAATTGTTTT
ATCTTC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002876710 RANGAP1 [Arabidopsis lyrata subsp. lyrata] | 1134 | 7e-122 |
| NP_191872 RAN GTPase-activating protein 1 [Arabidopsis thaliana] | 1106 | 1e-118 |
| XP_002520743 leucine rich repeat-containing protein, putative [Ricinus communis] | 874 | 1e-091 |
| CAN73875 hypothetical protein VITISV_039541 [Vitis vinifera] | 867 | 7e-091 |
| XP_002275003 PREDICTED: hypothetical protein isoform 2 [Vitis vinifera] | 866 | 9e-091 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9LE82 RAN GTPase-activating protein 1 | 1106 | 6e-120 |
| Q9M651 RAN GTPase-activating protein 2 | 803 | 8e-085 |
| Q7RTR2 Protein NLRC3 | 232 | 1e-018 |
| Q5DU56 Protein NLRC3 | 194 | 3e-014 |
| O13066 Ran GTPase-activating protein 1 | 187 | 2e-013 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9S424 Leucine rich repeat-containing protein, putative | 874 | 7e-092 |
| A5AWW1 Putative uncharacterized protein | 867 | 5e-091 |
| A5JGX7 RAN GTPase-activating protein 1 | 863 | 1e-090 |
| Q9SBS1 Ran GTPase activating protein | 856 | 9e-090 |
| B7FLD7 Putative uncharacterized protein | 851 | 3e-089 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G63130.1 RANGAP1 (RAN GTPASE ACTIVATING PROTEIN 1); RAN GTPase activator/ protein binding | 1107 | 4e-121 |
| AT5G19320.1 RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2); RAN GTPase activator | 803 | 7e-086 |
| AT3G06000.1 leucine-rich repeat family protein | 395 | 1e-038 |
| AT1G10510.1 emb2004 (embryo defective 2004) | 235 | 5e-020 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
