RadishBase

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Information for unigene UN32181

FASTA Sequence

Unigene ID: UN32181	Length: 823	SSR
GTACAGAAAAAAAAGAGAATTGAAAGAAACCCTAATTGAGACAATTAAAGAATGCCCTAATTAGACTTGCAAGACACGGGTCATTA CTCGAAACCTTTTCCTAACTTCTTCAAAGCTTCACTGGGTTCGTTGGTTAAAGGGTTTGTGGACTGGCGACAGAGAGGACAAGAGT CATGTCGATCCAACCAATGGGTCAAGCAATCTTCATGAAACATATGCACGCATCCAGGCGGTTGGCATAGGGCTTCTTGTTCCGAC ATCTCCTCTAGACAAATCGCACAAGATCCTTCTACTTTCGCTGTCGTAGGAGCAGAACTAAAAGGCGCCACGAAGTACTCTTTCTT TGTAAATTTGAGGAATACCGTGATCAACAAGGGTCCTTGGGCAAGTCTTTCCGTTGGGATTCGAGAACAATCTGGTCGGTGACAAG TCGGGACAAGACAGGTTCGTTGAAGCGTTTCTTGATTTCTTGATGAACGGTGGTTGGTTCAAAGTCTTTGAGCCTGAGAAGCGATA GCATGTCGGGAAAATAAGAAGAATCGAGGTAAGTGCCGAGACTCGTGATGTTACCATCATCACTCTCGTCTACGAGAAATTCTTGG ATCTCCCGACGCTGACTGATGAAGACAGAGTTTAATAACCCTAAGGACAGACCTTGAGGCGTTACCTGTGAACTGATCTCGACATT GAGTGCTCTTGTTTCCATCTTCTTCCTTGAAGTTGAAAACACACAACAAAAACTCGGAGATGAGTCGTAACAGAGAGAGAGAGAGA TCAGAGTGCTGTGAAAGAAGAAAAGTGTGTTGGTGAATAATGAATCCCT

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
CBI16994 unnamed protein product [Vitis vinifera]	155	2e-008
XP_001785327 predicted protein [Physcomitrella patens subsp. patens]	155	2e-008
XP_002319324 predicted protein [Populus trichocarpa]	155	2e-008
XP_002266319 PREDICTED: hypothetical protein [Vitis vinifera]	155	2e-008
EAY85202 hypothetical protein OsI_06565 [Oryza sativa Indica Group]	154	2e-008

Swiss-Prot top hits (Blast detail)	Score	e value
Q8W571 RING-H2 finger protein ATL4O	144	2e-008
O64763 RING-H2 finger protein ATL2G	139	6e-008
Q84W40 RING-H2 finger protein ATL1N	137	1e-007
O64762 RING-H2 finger protein ATL2F	137	1e-007
Q9SN28 RING-H2 finger protein ATL4E	137	1e-007

TrEMBL top hits (Blast detail)	Score	e value
A9U391 Predicted protein (Fragment)	155	1e-008
B9I872 Predicted protein	155	1e-008
A2X2Z2 Putative uncharacterized protein	154	2e-008
B9HTJ5 Predicted protein (Fragment)	153	2e-008
B9I6S0 Predicted protein (Fragment)	153	2e-008

Arabidopsis top hits (Blast detail)	Score	e value
AT4G40070.1 protein binding / zinc ion binding	144	1e-009
AT4G15975.1 protein binding / zinc ion binding	141	3e-009
AT2G35000.1 zinc finger (C3HC4-type RING finger) family protein	139	6e-009
AT1G72200.1 zinc finger (C3HC4-type RING finger) family protein	137	1e-008
AT2G34990.1 zinc finger (C3HC4-type RING finger) family protein	137	1e-008

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


6	2			100%

Unigene Members	Member information