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Information for unigene UN32640

FASTA Sequence
Unigene ID: UN32640Length: 1207 SSR 
GCAGCTTGAGAAATTCTTAAGATTACTTGTCATGAAAGAAAGGGTTTACAAAAGAGTTACAAAATTCAGCCTTGGTGTGGTGGTGG
TGGTGGTGGAGGCATAAACATGTGATGATGGAGGTGCATTGGTTGTTGTGGCGGTGATGGTCCACCTTGCTGCATGTGTTGCGGGG
GCCACCCATGTTGGTTCATTCCCATGGCTTGAGGAGGTGGTGGCCTTGGACCGCCAAAACCTTGTTGGTGATGAAAAAACTGGGGA
GGTGGTGGCGGTGGCATGCCTTGAGGAGGACGATACTGCATGGGCGGTGGAACCGCTAAGCCGTGCTGTTGTTGATGCGGCTGAAA
TTGCCAAGATGGTGGCTGAATTTGGTAGACTTGTGGAGGTGGTGGCGGCGGTGTTGGACGAGGACCCGGGATCGGAACAGGTTGCA
TGCCGCCATTGGCAAACGGACGTGGTATACCATTAGCTTGAGGAGCAGTTGGTGGACCGCTTGCGAATAGAGTATGGGGTCTGCTT
TTCTGGGCAACTGGATTTGTGGCAGCCAAAAGCCTCTCTGCTGGAGTACCATGGCGCTCTCCTTTGGTGTCTTTCTTGTATGCGTA
AGAGACTGTTATTTGACGATTACACAGATACTGTCCGGTCATTGCCTCAATAGCAGCATCAGATGCGTCAAAGGAGTCATAGCTGA
TGAAACCAAAACCTCGTGAGTTCCCTGTATCAGGATCTCGCATGATCTTAGGATTAGAAGCGACCCCACCAAATGCGCTGAAAGTA
TCATACAAGATCTTTTCATCCACGTCAGGGTCAAGGTTTCCAATGAAAAGGTTAGCACCAACATCCAAACTCTTCTTATCTTGAGA
AGCCTTGTTAACACGTATAGGCTTCCCATGGATCTTAATCATGTTAAGAACCTTAATGGCATAGTCAGCATCTTCCTCGCTACGGA
ACTCAATGAATCCATATCCTAGGTGAAGACCTGTCACCCTATCTTTCGGGACGTAGACGTTAACAACTGGGCCGGATTGTACGAAC
AGTTCCCAAAGCAATTCTTCAGAAAGCTGGGGATCGAGACCGCCGACGTAAACAGTAGCTTCTTGGTTCCTCTCGGCGGAGTGTTG
GCCAAGAAGATTGGCTCCGACTCCCGGAGCTATTCGAGTCGTCATCTACTTCTCCTCCTTTACTCCGGTCGCCGGAAGAAAAGCCC
TCC

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
NP_179441 splicing factor 3B subunit 4 [Arabidopsis thaliana]16789e-185
AAK59656 putative spliceosome associated protein [Arabidopsis thaliana]16752e-184
AAM65408 putative spliceosome associated protein [Arabidopsis thaliana]16653e-183
XP_002886178 hypothetical protein ARALYDRAFT_480759 [Arabidopsis lyrata subsp. lyrata]16635e-183
XP_002883837 predicted protein [Arabidopsis lyrata subsp. lyrata]15515e-170

Swiss-Prot top hits (Blast detail)Scoree value
Q15427 Splicing factor 3B subunit 49642e-103
Q8QZY9 Splicing factor 3B subunit 49633e-103
Q6AYL5 Splicing factor 3B subunit 49633e-103
Q09442 Splicing factor 3B subunit 48943e-095
O14102 Spliceosome-associated protein 496443e-066

TrEMBL top hits (Blast detail)Scoree value
Q9ZU66 Putative spliceosome associated protein16786e-185
Q94C63 Putative spliceosome associated protein16751e-184
Q8LAF1 Putative spliceosome associated protein16652e-183
B9RRM5 Spliceosome associated protein, putative13452e-146
B8BH92 Putative uncharacterized protein12233e-132

Arabidopsis top hits (Blast detail)Scoree value
AT2G18510.1 emb2444 (embryo defective 2444); RNA binding / nucleic acid binding / nucleotide binding16855e-188
AT1G49760.1 PAB8 (POLY(A) BINDING PROTEIN 8); RNA binding / translation initiation factor3101e-028
AT4G34110.1 PAB2 (POLY(A) BINDING 2); RNA binding / translation initiation factor3055e-028
AT2G23350.1 PAB4 (POLY(A) BINDING PROTEIN 4); RNA binding / translation initiation factor2876e-026
AT3G14100.1 oligouridylate-binding protein, putative2742e-024

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
122  100%

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