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Information for unigene UN32754
| FASTA Sequence |
| Unigene ID: UN32754 | Length: 1012 |
SSR | | GTGCAAATATGACATTAGAACTCAAGATATACACTAAAAACATATCGAGGATATGACTATATATGATCTTTATATATTTCTAGGGC
ATCTAGCATTTTTTTATTTAGTTATGAATACAAAGCCAGTTCTTTGAGAGCTAGGCAACATCAACAATCGAGACTAAAACCATCAA
AAAGTCTTGAGACATATATAAAAGCTATATATATATATATTCTATATGGATGGGATGTTGATAGGAATCAACCCATGTCTTGATAG
AACGAACCATCATGAGAAGGAGATGTAACCCAAATTTGCCGATTGAAGTACTTTGAGATGATCTTGATTGAAAGGGTTCAAGTGTT
GTTCCAAGTCAGGGTAGATTGAGAACTGTCCAAAGCCTGACGAGTTTTCGGTGGGGTAACTGTTCGCTATCGCATCTCCGCGCTGA
ACCGTCCCTGAACTTACGGTTTGGTTAACCAAATGGGTCTGATCATGATGATGATGGTGAATATTTTGATGTTCTTGATGATGATA
AGGAGTCGTAGTATTGTCTCCATAATAACTACTAGGGTTTTCTGATGATGGTGAATCAGCAAACAGTATGCTTTGTGCAGCTTGTT
GCTTTAGAATCTCAAGCTGTGCTTGTAGATTCACAACCTGTTGTTGGAGAGCAAAGATATGAGAGACGCAGCCATAGATGGGATCT
TGAAGCCTAGCTTGAGCTTCATAGGAGATTGTAATGGCGGCTTCACAACGATCACTAATGGGAAGATTCGAGAGAATTTTAGAAGC
ATTGCTAGCTCCAAAGACCTTGTGAATGGCTGCAAAGTGTGAAGATCCTTGTTCATGACAAAAGTATGGAGCAAACACACATCCAT
TTGCACATTTCCTCCTAAGAAACTTACAAGCGCCACAAGGGGGGCCAGAGCTACTCATGATATGATTGGTGTTGATGATAATTCTT
GATTCCAAGGTCGAATTTAATTTTAGGATTAAATCGTGTTTGATGCTATGGGAATTAGGTTTTCCC
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| GenBank top hits (Blast detail) | Score | e value |
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| NP_191378 LOB domain-containing protein 29 [Arabidopsis thaliana] | 949 | 2e-100 |
| XP_002878193 lateral organ boundaries-domain 29, lob domain-containing protein 29 [Arabidopsis lyrata subsp. lyrata] | 895 | 4e-094 |
| NP_850370 LOB domain-containing protein 17 [Arabidopsis thaliana] | 576 | 4e-057 |
| XP_002881844 hypothetical protein ARALYDRAFT_346041 [Arabidopsis lyrata subsp. lyrata] | 575 | 5e-057 |
| XP_002534416 LOB domain-containing protein, putative [Ricinus communis] | 534 | 3e-052 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9M2J7 LOB domain-containing protein 29 | 959 | 7e-103 |
| Q9SLB6 LOB domain-containing protein 17 | 576 | 2e-058 |
| Q9SJW5 LOB domain-containing protein 14 | 427 | 3e-041 |
| Q9SLB7 LOB domain-containing protein 16 | 426 | 4e-041 |
| O22131 LOB domain-containing protein 18 | 401 | 3e-038 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9T847 LOB domain-containing protein, putative | 534 | 2e-052 |
| A5AIW9 Putative uncharacterized protein | 524 | 3e-051 |
| B9GS34 Predicted protein (Fragment) | 515 | 3e-050 |
| C6T3Z6 Putative uncharacterized protein | 513 | 6e-050 |
| A2YY71 Putative uncharacterized protein | 503 | 8e-049 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G58190.1 LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29) | 960 | 5e-104 |
| AT2G42440.1 INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; CONTAINS InterPro DOMAIN/s: Lateral organ boundaries, LOB (InterPro:IPR004883); BEST Arabidopsis thaliana protein match is: LBD29 (LATERAL ORGAN BOUNDARIES-DOMAIN 29) (TAIR:AT3G58190.1); Has 322 Blast hits to 322 proteins in 14 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 322; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | 576 | 2e-059 |
| AT2G31310.1 LBD14 (LOB DOMAIN-CONTAINING PROTEIN 14) | 427 | 3e-042 |
| AT2G42430.1 LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16) | 426 | 4e-042 |
| AT2G45420.1 LBD18 (LOB DOMAIN-CONTAINING PROTEIN 18) | 401 | 3e-039 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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