 |
Information for unigene UN32902
| FASTA Sequence |
| Unigene ID: UN32902 | Length: 1251 |
SSR | | GGAACGCAAAAGGAAAGTTATCTCCAAAAAATACAAAACACAACTCAGTTTCACAACCATTATCATCGACTTACTCTGACATGCTT
ATATATTTTAAAAAAAAAAATAAAATTGGAGCTTTCTAGATGTTGAGTCAAAAACAAGCCCCCACATGACCAACCTAACACACGCT
ACAAGTCTCTGTTGAATCTGCAACCACAAAAAAAAAGTCTCAAGCTTCACTTTTTCTCTTTTGACGTCTTCTTTCCGCTTCATTCT
CTGCCACCAAAACGTGAAACTCTGATCCAATCATGTCGTATATGTCGACATTCTTCGAGCTGCTGAGGTTAACAGTCTCCGTGATC
ACTTCCACAGTCACCGTGAAGCCTAGGTTAGACAAGACGCGTATCGCGTTCCCGATTCTGCATATGTTTTGTCTAGTCTCGAGCGG
AGTATGGCTTTGCTCTTTGGAGGAGGAAGAGATCATCATCTCATCATCCTTCTGATCATCGATCATCACAGGATCTCTGATCTCAA
CGTGTTCCCCGACCCATATGAAGCCGTTGCAGCCGATAATCAAATCAATCCCAAGGCTTTCTATGTAATGGAAGTGATGTTTGCTT
CTCTTAACCAAGTAGGGATCAACCTTGAGAAGCTGTCCCTTCTCGAGCTTTCCATACTTTTGACTTCTTGCGTGTAACTGCAAGCT
GCCATCATGCTGAATGCTGCGTACTTCGGCACAAACGACATCATGTTCTACAAAGATGTTCCGCATATTGAGTTCATCTACAGACG
TTCTTCGCCTCTGACTACCATCGGGCATGTTCATGGAAGAAAGCATTAATACTCCATCCTGAGTAAAGTTGAGCTCTACTGTCCAA
CGTTTTTGAGCAACCTCAATGATACGGCCTACAACAATATCTCCAACCTAAGGCTTGTACCTGGCGCGTAAGGTGCGTACATAGAC
GAGCTTATCCACGCGCTCAACAACTCCACAGACCGTCGCTAGCAACTCGCCCTCGACCTCGGAAGTTCCGTGTCCCTTGAGGAAGG
CGTCTTCGTGGTTGACGGGAATGGTATCTGTGACGATAACAGAAGCGTCTGAGTTTGCCGTCGACGACAGTGATTGTAGCCGCTCG
ATGGCTCTCTCGTACCTAACCTTCTGCGTCTGCGTAAACGGTAGCTGTATCTTTCTCATCATCTTTTAGAAGCTTCTCCCTCTCTC
TCTCTTTGAGAGTCCACAAACAATGACGATTCAAAATCAAAGTTTCC
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_171835 exosome complex component RRP4 [Arabidopsis thaliana] | 1465 | 5e-160 |
| XP_002889455 ATRRP4 [Arabidopsis lyrata subsp. lyrata] | 1454 | 9e-159 |
| CBI32318 unnamed protein product [Vitis vinifera] | 1138 | 4e-122 |
| XP_002303939 predicted protein [Populus trichocarpa] | 1095 | 4e-117 |
| XP_002524799 rrp4, putative [Ricinus communis] | 1090 | 1e-116 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q09704 Exosome complex component rrp4 | 478 | 5e-047 |
| Q8VBV3 Exosome complex exonuclease RRP4 | 459 | 9e-045 |
| Q2KID0 Exosome complex exonuclease RRP4 | 458 | 1e-044 |
| Q13868 Exosome complex exonuclease RRP4 | 454 | 3e-044 |
| P38792 Exosome complex component RRP4 | 385 | 3e-036 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9ZVT7 At1g03360 | 1465 | 3e-160 |
| B9GX78 Predicted protein | 1095 | 3e-117 |
| B9SFN0 Rrp4, putative | 1090 | 1e-116 |
| B7FL19 Putative uncharacterized protein | 1055 | 1e-112 |
| B4FVR4 Putative uncharacterized protein | 1023 | 6e-109 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT1G03360.1 ATRRP4 (ARABIDOPSIS THALIANA RIBOSOMAL RNA PROCESSING 4); RNA binding / exonuclease | 1465 | 2e-162 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
