RadishBase

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Information for unigene UN33015

FASTA Sequence

Unigene ID: UN33015	Length: 1345	SSR
GAGAGAAAAAAAGATGAATTTGATTTGTGTGTTCAAAAGGACTTAATCACAACAAATAGGACATCTGATCAACCCATTCTCATTAC AATGTGGACATCTTTGGAACCCATACTCTGTTTCTTCTGTTCCTTCTTCCTTTGCATCTTCATCTTCAGTGTCATAGTATATTTTA CAGCTTCCTGAACACGTCTCACACGGCACAAACCGAACATCACCACAAGCCTCACATTCAATCCCACAACCCGTTAACCCATCCTC GACCCTTTCGCAACCATCTACAACCTTTTCAAGCGTTCCATTTTCATTCAACTTCTTTATCTCTTCCACTCCACCAAGATACTTGT TCCCCAAGAAAACTCTAGGCAGGGCTATTCCAACGCCACCGTTGAACTCATCCCTCAACAACTCCTTCAGCTCATCCTTAAAACCC GAATGCATCGACACATCGCGCTCGTCGAGACGAACTACTAAGCTCTTTAGTATCACCCTGACGTTGCAACTGTCTTCGTATGTCTT CCTTATACCTCTAAGACTTGTGAAGTAAACTATCACCTTGTCTTGCTTCCTTCCAAATTCCCCTTCTTCTCCGTCTGAAGACCCGG ATACCGGATCCACATTAGGGATCCGGATGTGAAAAGGATGATCATCAGGGACTTCTTGAAGCGATTTCCTGAAAGTGGAAACGATC TCAGGAGGGTCCAAATCACGGAACCTTGACTTAGGTCGATCATCATCATCATCACAAGGTTGGACACGAACAACATCAAAGGAGAA GCTTCTCAGATGATCAGGTGGTCGTAAAGGACTAGCATCTTCAAGACCTTCCATCAACTCCCACGTGTTGATCGTCTCTGGCTCAC CCGGAGGCGACACAATCGGAGTTTTAGGCACCACCACCTTGGGGATCCTCTCGTTCATCATACTCGACCAGACCTTTGCTTCCATT ATCTTAGACTGCAACTTCTCTGTTTCTTTATCATTCTGATGGAACCCATCACCTGAGATTAGCTTCTTCTCCTCGGAGACGACTCG CTTTTCTCTGATGGTTTCCAAGTGTTCCTCGATGTGCCTGAAAGGAGAATCGCAGAGGGTGAGAGATCCGACGGTGGAGGATGTGA GAGCCACCGTGTGATGGCTATCTCCGGTGTGTTGCGCCGGATGGTGAACGTGCATTGAATAGCTTCGGGGAACAACCACTGGAGAT AATCCTCCTCGACAATCACTGCAACGCTTTTTGTGCCTGGAGCTTGCGCAGCCCATTGTAATGATCGGAAAGAAAAAAAACAGAGC AAAAGGGAAAGAACAAAACAGAGGAAATAGAGGTTTGATTTTTTTTTTGGAGCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002868691 glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata]	1421	6e-155
NP_680368 glutaredoxin-like protein [Arabidopsis thaliana]	1267	5e-137
NP_189527 Glutaredoxin-like protein [Arabidopsis thaliana]	1073	1e-114
ABD32222 Thioredoxin fold [Medicago truncatula]	875	1e-091
XP_002875475 glutaredoxin family protein [Arabidopsis lyrata subsp. lyrata]	807	1e-083

Swiss-Prot top hits (Blast detail)	Score	e value
Q9LH89 Uncharacterized protein At3g28850	1281	5e-140
Q9FLE8 Uncharacterized protein At5g39865	1267	2e-138
Q50H32 Glutaredoxin domain-containing cysteine-rich protein 1	213	3e-016
A8MXD5 Glutaredoxin domain-containing cysteine-rich protein 1	211	6e-016
Q9VNL4 Glutaredoxin domain-containing cysteine-rich protein CG31559	149	9e-009

TrEMBL top hits (Blast detail)	Score	e value
Q2HVR5 Thioredoxin fold	875	9e-092
B9RUQ1 Electron transporter, putative	702	1e-071
B9IJW3 Putative uncharacterized protein (Fragment)	640	2e-064
B4FZH4 Putative uncharacterized protein	468	1e-044
C5WVY1 Putative uncharacterized protein Sb01g045730	465	3e-044

Arabidopsis top hits (Blast detail)	Score	e value
AT5G39865.1 glutaredoxin family protein	1371	1e-151
AT3G28850.1 glutaredoxin family protein	1282	3e-141
AT5G13810.1 glutaredoxin family protein	327	2e-030
AT1G64500.1 glutaredoxin family protein	301	2e-027
AT5G58530.1 glutaredoxin family protein	287	7e-026

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


10	2			100%

Unigene Members	Member information