RadishBase

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Information for unigene UN33300

FASTA Sequence

Unigene ID: UN33300	Length: 1249	SSR
GTAAACTGAAACCCAGCACAACTCAACAAAAAGAACAAAACTCAAAAGTGACATAAGCAAAAAAAAAGAAAAAGTACAGTATCCAT ATCAGAAACCAAATCCAGTTAAACTTACATAGTTATTACCACAGAGAAAAAGGATTAAAACCCTTTTTGTATAATAACAATAATAA AACAAAAAAAAAACATCAAAAGGACCAAGCAAATTCATCATTCCGACCAGTAAAAAGATAAAACGAAGATTGATTACTCAAATTCA TCTTCGTCCTTTTGTTTTGTTGATTGGGAAAGTAAATCAAGCAACAGAACATTCCCTCGCAAAGTGACCTTTTTCACCACACTTGT AACACTCTCCACCACCTCCACCTGCGTTCCTACCGCCACCTCCACCACTTCCTCTCCGGTCACAATCACGAGCCAAGTGACCAGTA CCACCACACTCGTAACAAGCACCAGACTGTCTCTTCGTCGCAAAATCCCTAGCCATGTGTCCGACTCCACCACACGTGTAACAAGT ACCACCACCACCACCACCTCCGCCGCTTCCACGTTCACCTCCTCCGGTTCCTTTCTGAACGCAATCCCTAGCAAAGTGACCAGCTT CACCGCAAGTGTAGCACCCACCGGAGGCTCCTCCACGTTCACCGCCGCCGCTTGATTTCTGAACGCAATCCCTAGCCAAGTGACCA GACTCACCACAACTGTAACAAGACGCTCCACGCTCACCGCCGTCTTCATCACGGCAATCCTTAGCAAGATGACCAGCCTCGCCGCA ATTATAACAACTTCCTCCTCCGCCGACGCGTCTAACACCACCGCCGCCGCGAGAGCTAGTCTCCTTCTTACGGAGAGGAGCACCTC CAGGAGCAGTGACGTCGACGGCTTTGGTCTTCCCGTCGGTTCCCTCTACGACGGAGAACTCGACCAAATCGTCGATGGCTAGACTC CTGTAACCGTCGGAGACGATGGAGGATTGGTGAACGAAAAGCTCTTCTCCGCCGCCGTCGGGGGTGATGAAACCGTATCCCTTGGA GTCGTTGAACCAGTTCACCTTCCCGGTAGATCTCGCCGCCGATTGATCCTCTGACGCCATCGGATTGAAGATTTTTTGAGTGATTA GGGTTTGTTGGTTGAGGTAACCGTCGGCGCGTTTGTGTATATATAGAGAAGCCCTAATTAAGTGGAATCTAATCAAACCCTAATTT GACTGATACACAAACAGATGTGAGTGGAGGATTCTTCGGGAGTCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
ADE80751 cold shock domain protein 1 [Eutrema salsugineum]	1057	9e-113
XP_002867041 hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp. lyrata]	862	4e-090
ADE80750 cold shock domain protein 3 [Eutrema salsugineum]	791	7e-082
NP_195326 cellular nucleic acid-binding protein [Arabidopsis thaliana]	747	8e-077
NP_565427 cold shock domain protein 3 [Arabidopsis thaliana]	671	5e-068

Swiss-Prot top hits (Blast detail)	Score	e value
P27484 Glycine-rich protein 2	480	3e-047
Q38896 Glycine-rich protein 2b	396	2e-037
Q6S6W0 Glycoprotein gp2	193	6e-014
P47179 Cell wall protein DAN4	182	1e-012
P28968 Glycoprotein gp2	181	2e-012

TrEMBL top hits (Blast detail)	Score	e value
O65639 Glycine-rich protein	747	6e-077
Q94C69 Cold shock domain protein 3	671	4e-068
Q6YUR8 Cold shock domain protein 1	603	3e-060
B4FXR6 Putative uncharacterized protein	602	4e-060
C0PLI2 Putative uncharacterized protein	600	6e-060

Arabidopsis top hits (Blast detail)	Score	e value
AT4G36020.1 CSDP1 (cold shock domain protein 1); RNA binding / double-stranded DNA binding / nucleic acid binding / single-stranded DNA binding	801	2e-085
AT2G17870.1 cold-shock DNA-binding family protein	792	2e-084
AT4G38680.1 GRP2 (GLYCINE RICH PROTEIN 2); double-stranded DNA binding / mRNA binding / nucleic acid binding / single-stranded DNA binding	444	4e-044
AT2G21060.1 ATGRP2B (GLYCINE-RICH PROTEIN 2B); DNA binding / nucleic acid binding / zinc ion binding	396	2e-038
AT1G23860.1 RSZP21 (RS-CONTAINING ZINC FINGER PROTEIN 21); protein binding	124	5e-007

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information