RadishBase

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Information for unigene UN33326

FASTA Sequence

Unigene ID: UN33326	Length: 1082	SSR
GCCAACGCAATTGAACCAAATTTTAAATTATTTGGAAACTGTTAGTTAAACATGAAATGTGGGGGCTATGACATTGTGTTTAAAGA CAAAACGTTTAAAGACAAAAGCTTGTTTCTACATTCATGAAAAATGTGCGAACATTTGCATCAGCAAACAAGAATTCTGTCCCCAA AACTCTGCCTGATTACAATCCAACAACACATGTAGCTGTAGGGAATGAAACATTCCTACTTTGTCACAACTTCTTTGTGAGCTTTG AATGATAAAATCACATTCCAAGCCAAAGCAACTACGTTGGAAGCGAGTACCTGGAAGTTTTGTGGAACAAATCTGAAGTTAAGAAA CTGAAATGGAATCCAAAGCTGCCAATTTGCTAGCACTGCACCAGTCCACTCCTGCTTTAGCTTCGGTATGACATTTGATGGTTTTC CTTCAAGTGTCACAACAGCTGATAAGAAAACTCCAACAAAAACTGGAGCAAAAACAAACTGGTCCAGTAAAAGTCGCAAAACTGCG CCTGATAATCCGGAAGCTGTCACCACTTTGCTCAAATACAAGTACCAGAAGTGCAAAGCTGGACCGACAAGCCCTAAGCCCAAGAT GGTAAACGTGAGTGTCCTCTTCTTGTCAAGAGATGAGGTCTTATTGATTGTAAGCTGACAGATCAAATCACCAATGAGGGTCAAAA GTGCTGATGTCACAGATTTGGTCAAAACAGGATAATCCGAGAGGAGAGCCAAGTACCATGGCAGAAATGACCACTTGTTTCCGTTT CCGCCGCTATCTTCACCTCCACCACCACCACCACCACCTGAACCTCCACCAATACCGCCGGAATCACCTGAACCTCCACCTGAGAC CGAAGAGACCCGACCCAGAGGCCCGAACCCAGTCCCGGGACGTCCAGACCAATTGGTACGGCCAAAATTCAGTGAACCGTTTTTGT AACCAAAACGAAGCAGCCCTGCTTGAACCAGCTCCAGTTACATTCCTTCGGTTGTCATTACCGGAAACACCAAGAGAATTGAACAC GAGTGGTGTTCTCCGGACGAAAGTTGCGTGGCTAAGCATCATGGTTTCCC

Annotation (GO term)

GenBank top hits (Blast detail)	Score	e value
XP_002871905 hypothetical protein ARALYDRAFT_910013 [Arabidopsis lyrata subsp. lyrata]	1110	5e-119
NP_197476 protein Mpv17 [Arabidopsis thaliana]	1050	5e-112
AAL25565 AT5g19750/T29J13_170 [Arabidopsis thaliana]	1050	5e-112
AAM65990 unknown [Arabidopsis thaliana]	1041	5e-111
XP_002308859 predicted protein [Populus trichocarpa]	845	3e-088

Swiss-Prot top hits (Blast detail)	Score	e value
Q54XX9 PXMP2/4 family protein 2	265	2e-022
Q54FR4 PXMP2/4 family protein 4	261	7e-022
Q54GD8 PXMP2/4 family protein 3	258	1e-021
Q2KIN6 Protein Mpv17	246	4e-020
Q06563 Protein SYM1	190	1e-013

TrEMBL top hits (Blast detail)	Score	e value
Q93Z42 AT5g19750/T29J13_170	1050	3e-112
Q8L9G1 Putative uncharacterized protein	1041	4e-111
B9HDU1 Predicted protein	845	2e-088
B9IHK6 Predicted protein	842	4e-088
B8BLU6 Putative uncharacterized protein	726	1e-074

Arabidopsis top hits (Blast detail)	Score	e value
AT5G19750.1 peroxisomal membrane 22 kDa family protein	1051	1e-114
AT5G43140.1 peroxisomal membrane 22 kDa family protein	253	5e-022
AT3G22800.1 leucine-rich repeat family protein / extensin family protein	146	1e-009
AT4G13340.1 leucine-rich repeat family protein / extensin family protein	144	2e-009
AT1G54215.1 proline-rich family protein	142	4e-009

EST library breakdown for ESTs in the assembly

Library

ESTs

Percentage of ESTs in assembly


7	2			100%

Unigene Members	Member information