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Information for unigene UN33328
| FASTA Sequence |
| Unigene ID: UN33328 | Length: 1170 |
SSR | | GGCAACGAATATACAAAGATTTATTAGTTAAAAATACAAATATTCAACTCTGATAAAAAAATTTTGAATTTGTAAATACTAATACA
AGTCCAAATGATGATATGGTTATGAGGACTTAGGACATAACTCTACTAAACCCAGCACTCTTGTTCACTCTCTCATCTCTTTCCAT
TACTTGCCTAACCTTAACCACATCCTCCCATCTCTCAGCATTTGCATACATCTCCGCCATCACTTTATACACTCCTCCATCCTCTG
GACTCAGCTCCCTAACTCTCTCCGCAGCTTTCTCCGCCACCTCTATGTTCCCGTGGATTCTACACACTCCCAACAGACCGCTCCAC
GCCAACAGCTTCTCTCTCTTCCCTCCATCTCTAGGCATTTTCTCAATCATCTCCGCTGCTTCTTCTATCAACCCCGCTCTTCCCAG
CAAATCCGCCATGCACCCGTAATGTTTCATCTCTCTGTCGACATCATACTTCGACCCCCATTTGGTCGAAAAGCTTCTTGGCTTCA
TCAACTAGACCAGCATGGCAGCAACCCACTAACACGCTTATGAAGCTTACACCATCAGGTTTCACACCCGAGCCAACCATCCTACG
GAAGTAATCAACAGTTACCTCGCCGTAACCGTGCATTGCAAGACCGGTGATCATAGCATTCCATGTGAACAAAGCCTTGTCTGAAC
ACAAACTAAAGATCTCCATCGCTGTCTCGATGAAACCACATTTCGCATAGAAATCAACCAACCCAGTAGCTAAAAACGAATCGGAC
AGCAACCCGAATCTCAGAGCTTGGCAATGCAGCGCCTCGACTAAGGCAAAGCTAACGTTCTTCTTCTTCTTCGCACAAGCGGCCTT
GAACACGAAAGGGAAGGTGTGGAAGTCGGGAGGAACGGAACGGCGTCGCATCTGGACGAAGAAACGGTGGGGAGAGAGAGACGGCG
CGTGAAGGGTGTAGACTCTAACGATCGTGTTGAAGCAGAACGTAGATGGGTTTGTAAACAAACTGAACACTAAATTCGCGTAACGC
ACGATGACAGAAGTGGATGATAAAGCATGTGTCGATGTCGGAGACGGTGTTATTGAGGTGATAGCAAAGAGGATGTTAGCGAGAAC
AGAGTTCTGATTCGTACCACCGGAAGTGATGAAATGTGCATGAAACTGATCC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_200988 pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | 538 | 1e-052 |
| XP_002866455 hypothetical protein ARALYDRAFT_496347 [Arabidopsis lyrata subsp. lyrata] | 520 | 2e-050 |
| XP_002511070 pentatricopeptide repeat-containing protein, putative [Ricinus communis] | 378 | 5e-034 |
| XP_002318186 predicted protein [Populus trichocarpa] | 369 | 5e-033 |
| XP_002281032 PREDICTED: hypothetical protein [Vitis vinifera] | 324 | 8e-028 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9FLS9 Pentatricopeptide repeat-containing protein At5g61800 | 538 | 6e-054 |
| Q9SZK1 Pentatricopeptide repeat-containing protein At4g38010 | 282 | 3e-024 |
| O80647 Pentatricopeptide repeat-containing protein At2g39620 | 273 | 3e-023 |
| Q9S7F4 Putative pentatricopeptide repeat-containing protein At2g01510 | 267 | 1e-022 |
| O49399 Pentatricopeptide repeat-containing protein At4g18840 | 261 | 7e-022 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| B9RA45 Pentatricopeptide repeat-containing protein, putative | 378 | 3e-034 |
| B9I431 Predicted protein | 375 | 7e-034 |
| A2XT05 Putative uncharacterized protein | 320 | 2e-027 |
| A3ATG7 Putative uncharacterized protein | 320 | 2e-027 |
| Q01LH0 OSIGBa0155K12.4 protein | 320 | 2e-027 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G61800.1 pentatricopeptide (PPR) repeat-containing protein | 539 | 4e-055 |
| AT4G38010.1 pentatricopeptide (PPR) repeat-containing protein | 282 | 2e-025 |
| AT2G39620.1 pentatricopeptide (PPR) repeat-containing protein | 273 | 3e-024 |
| AT3G02010.1 pentatricopeptide (PPR) repeat-containing protein | 267 | 1e-023 |
| AT1G11290.1 CRR22 (CHLORORESPIRATORY REDUCTION22); endonuclease | 261 | 6e-023 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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