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Information for unigene UN33350
| FASTA Sequence |
| Unigene ID: UN33350 | Length: 1394 |
SSR | | CCAGAATCCTTACAAGTTTACAAATTTTCAACACAATAATTTACACAAAATGTACATTCAAACCCCTAACCTATTTGAAAAGAACA
AATCACTGAGTTTCCACTTTATTCATGTAATAATATATACTTATGCCTTATACATACATCACATACACAGTTCTGTTGTGTGGTGG
CATATGTTACTTTTCTTGTTCAAATACTAACCCAAGTTAACTACCAAGGACCATCTGAATCAAGAGCAACAACGTCAATTAACTTA
CTCGAAGCCCATTTCATGGTTGCTTCTGTAATCTTGTTCTCTTCAACAACAATCTTCTTCAAGCGTTGTGACTTCATAACAAAAAC
CTCCACTTCATCAGCCTGAATCAGTCGACAACTTGCAATGTCTAAACTCCTCAACTTCACACAATTTCTGTTCAGAGAAACCAATA
CAGAACCTGTCAAGTTCTTGCATCCTCTCAAATCCAACTCAACCAAACCACCGCAAGAAGCTAACATCGAAACGACTTCCTTGTCG
TATAACCACTCGTTAAACGACAATTCCAGTTTCCATAACTTCCCTAAATGCTGTCCTAACGTCGCCAACAAACCTGTTTCCCTCTC
AACCGCGTCGCAGCTACGCAAAGAAAGCTCTTCAAGACTCGAACTAAAGCTTAAAGCTAAGACCTTTAGACCATGACCAGTCACGA
GGTAACAGCTCGTAAGCCTAAGAGTAGATAAATATTTGAAATTCGCAGCGAGAGAGACGAGATGCTCGTCCATCAAATCCATAGGT
AGACGCAAATCTAACGTCTTCAAAGTATCATTGCATCTAGCATTGTTCATGAAATGAACCAAACCGTCTTTGTTACCACCATCGTA
GATTAACAGAGAGTTGAGAGATTCACAAATCTCTGAAACTTTCAGCAGAACCACGTCTGCTATACTCCTACATGTCTTAAGCTCAA
TTTCCTCAAGATTCTTCAGACACAAACCGAAAAACTCTGTTTCTCCGACGGTTCCACATGATTTCAAACTCAGTTTCTTTAGCTTT
CTGCATCTCTTCCACAACCAGCTAACTCCGGTATCGTCTGACTGGATTCCGGTTAACGAAACCGACTCCAAACCCAATTCGACAAC
ATCCGGGTTTGGGTTTGACCCGGTTAAGGAAGCTGAAGAGTTTCTAGAGGAGACACGACTGATAAGTCCTTGAGAGAAGGAAACGA
AGCAACCCAGTGGAACGAAACGGGTCCCAGCAACTTGAGAGAGAGAGAAGTGAGAGACAAGGAAGTAGAGAGAGGAAGCAAGGAAG
ACGGAGAAAGTGGATTGACCAAGAAACAGAGCTTTCGGAGGTTGGAGCAGGAAGAAGAGACGATCGAGATGAGATGATCGTTGAAA
CTCGATTCCGCAACAGAC
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| GenBank top hits (Blast detail) | Score | e value |
|---|
| NP_198863 RNI-like superfamily protein [Arabidopsis thaliana] | 1168 | 1e-125 |
| XP_002868648 hypothetical protein ARALYDRAFT_493940 [Arabidopsis lyrata subsp. lyrata] | 1167 | 2e-125 |
| XP_002521466 F-box/LRR-repeat protein, putative [Ricinus communis] | 824 | 1e-085 |
| XP_002323795 predicted protein [Populus trichocarpa] | 806 | 1e-083 |
| XP_002272892 PREDICTED: hypothetical protein [Vitis vinifera] | 745 | 2e-076 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| P34284 Uncharacterized F-box/LRR-repeat protein C02F5.7 | 224 | 2e-017 |
| Q9UJT9 F-box/LRR-repeat protein 7 | 188 | 3e-013 |
| Q5BJ29 F-box/LRR-repeat protein 7 | 180 | 2e-012 |
| Q0VD31 F-box/LRR-repeat protein 4 | 177 | 5e-012 |
| Q9UKA2 F-box/LRR-repeat protein 4 | 170 | 3e-011 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q9FI63 AT5g40470/K21I16_20 | 1168 | 1e-125 |
| B9S647 F-box/LRR-repeat protein, putative | 824 | 8e-086 |
| B9IJK5 Predicted protein | 806 | 9e-084 |
| B6U754 Putative uncharacterized protein | 587 | 2e-058 |
| A5C233 Putative uncharacterized protein | 579 | 2e-057 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT5G40470.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: F-box family protein (FBL4) (TAIR:AT4G15475.1); Has 1784 Blast hits to 1176 proteins in 130 species: Archae - 0; Bacteria - 16; Metazoa - 963; Fungi - 149; Plants - 477; Viruses - 0; Other Eukaryotes - 179 (source: NCBI BLink). | 1168 | 5e-128 |
| AT5G27920.1 F-box family protein | 152 | 4e-010 |
| AT1G77000.1 SKP2B; ubiquitin-protein ligase | 150 | 6e-010 |
| AT1G21410.1 SKP2A | 143 | 4e-009 |
| AT1G80630.1 leucine-rich repeat family protein | 137 | 2e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
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