 |
Information for unigene UN33462
| FASTA Sequence |
| Unigene ID: UN33462 | Length: 1234 |
SSR | | GGCGGTTGGAGGGTTTGGGCTTAGGATGATGGATGGTAGGTTTAGTAGTAGTCCCATTGGTGCTGGAAGAAGCGGGTTTGCGAGTT
ACAACGGAGGGTCTGGATATGGGATGAATGTGAACTTTGAGCAGGGGCTACCCACAGGGTTCACTGGAGGGAACGTAGACTATGGT
AGAGGGATGAGTCCTTACTACATTGGTAACACGAACCGGTTTGGTCCTGTGGTTGGTTATGAAGGAGGCAATGGAGGAGGAGGGAA
CTCATCTTTCTTCAGTTCGAACCTCTGGGGAAACAATGGGGGTCGCAACTATAACAACAACAACAACAACAACATGGGAGGAGGAT
CAACAAGTGGGAACAACACACTTAACGGTCCATTTGGGAGTTCAGGGGATGTTAACTGGGGTGCTCCTGGAGGAAACAATGGTGTT
AGTAACGAGAATGTGAAGTTTGGTTATGGAGGAAACGGTGAATCTGGTTTTGGATTGGGAGGAGCAAGAAACATTGGGCCTCCTAG
CAAGGCAGCAGCAGCACCATCATCTTCATTCTCTTCTAACAATGCGGGTTATGAAGCAGGAGGACTTGCAGAGTTTTATGGGAATG
GTGCAGTCTATAGTGATCCCACATGGAGATCATCATCACCGCCTGAGACAGAAGGTCCTGCTTCTTTTAGCTATGGGATTGTAGGA
GGAGTTGGAGGAGGAGGTCCTTCTTCGGATGTTTCAGCTAGAAGTTCATCTCCCGGTTACGTTGGTAGTTACAGTGTGAACAAGAG
ACAACCAAACAGAGGCGAGCCATCAGAGTGAACGATCTGTGTATCTTTTGGGGAATCGTTTAGATAATTTTTTCTCCTTTCATACA
AAGCCTATGAGGACAAAACTTGGATCACAATTTTCAGCTAGAGCTAACCAGAAAAATCCCTCATGGTTTGGTTTTCTAAATTCATT
GGTCCTCCTCCTAAGGCTTTTTTTTTTTTTTTTTTTTTTCAATGAGGGACAGAAGAAACTGTATCAGTTTCCGGCCTGGCGGTATT
TACATAAGAAGAGTTCAAAACAAACTCTTTCCTTAGTTTCTTTGTTGTCATGTAATGGTTCTTTTTCTTTGGGTTCATGTTTAAGG
TTTGTGTCTTGAGGCAGCTTGTACTAGAGAGGTTATAAGTATCTTTAAGGTTTTATGTTTTTGATAGTGTGAGAGATATTGGAAAG
AGGATTTAGCCATGTAGGGCTTTTGAGAAT
|
|
|
| GenBank top hits (Blast detail) | Score | e value |
|---|
| XP_002882552 hypothetical protein ARALYDRAFT_478119 [Arabidopsis lyrata subsp. lyrata] | 1048 | 1e-111 |
| NP_850539 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1046 | 2e-111 |
| AAF21191 putative RNA-binding protein [Arabidopsis thaliana] | 1030 | 1e-109 |
| NP_566321 RNA recognition motif-containing protein [Arabidopsis thaliana] | 1030 | 1e-109 |
| AAK92717 putative RNA-binding protein [Arabidopsis thaliana] | 1030 | 1e-109 |
| Swiss-Prot top hits (Blast detail) | Score | e value |
|---|
| Q9NL38 N66 matrix protein | 189 | 2e-013 |
| Q54GV8 Uncharacterized transmembrane protein DDB_G0289901 | 174 | 1e-011 |
| P18165 Loricrin | 148 | 1e-008 |
| P07909 Heterogeneous nuclear ribonucleoprotein A1 | 144 | 3e-008 |
| Q54R73 Uncharacterized protein DDB_G0283357 | 144 | 3e-008 |
| TrEMBL top hits (Blast detail) | Score | e value |
|---|
| Q8W555 AT3g07810/F17A17_15 | 1030 | 9e-110 |
| Q94A00 Putative RNA-binding protein | 1030 | 9e-110 |
| Q9SFD3 Putative RNA-binding protein | 1030 | 9e-110 |
| Q2HH46 Putative uncharacterized protein | 219 | 9e-016 |
| Q0WMC1 Putative RNA-binding protein (Fragment) | 193 | 1e-012 |
| Arabidopsis top hits (Blast detail) | Score | e value |
|---|
| AT3G07810.2 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 1047 | 5e-114 |
| AT3G07810.1 heterogeneous nuclear ribonucleoprotein, putative / hnRNP, putative | 1030 | 5e-112 |
| AT5G46730.1 glycine-rich protein | 159 | 5e-011 |
| AT5G46730.2 glycine-rich protein | 155 | 1e-010 |
| AT3G18810.1 protein kinase family protein | 132 | 6e-008 |
| EST library breakdown for ESTs in the assembly |
| Library |
ESTs | Percentage of ESTs in assembly |
|
|
|
|
