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Information for unigene UN33578

FASTA Sequence
Unigene ID: UN33578Length: 811 SSR 
GGAGAGACACTTCACCTCTCTCTTATTCTTCCTTCCTCTCTCTCCTCTGCAAGAAACACCATCAATGAGTTCTACAGGAAACCCTA
AAATCCATGGGCTACATACGACTCATACAGAGACTGCTCACAAGGAGTATGCAGCGTCTACTGCCCTCAGTGGTGCTACGTCGTCT
TCCCACCTCCTCCTCCTTCCTTCTTCCTCGACGACGAAGACGATTCCTCCTCCTCTGACTTCTCCCCTCTCCTCATCGCTCTCATC
GGAATCCTCGCCAGCGCCTTCATCCTCCTCACCTACTACACTCTCATCTCCAAGTATTGCCACCGCCGTCGTGAAGCCTCCTCCTC
CTCCTCCATCAGCCGAGATCGCGAGATCTCTTTCTCCGTAACCGATACTCCTCGGCAGGGAAACAACGAGGGTTCGAATCCGGTTG
GAGACGGACTCGACGAGACTCTGATTAAATCGATAACGGTTTACAAGTACAGGAAGGGAGATGGATTCGTGGAGTCTTCTGATTGC
TCTGTTTGTTTGAGCGAGTTTCAGGAGAACGAGCGGTTGAGGTTGTTGCCTGAGTGCAGCCACGCGTTTCACGTGCCGTGTATCGA
TACTTGGTTGAAGTCTCACTCTAACTGCCCTCTCTGCCGCGCCTTCGTCGCGGGAGGAATTTCGAATTTTCTGGGGCGGAGTTCAG
TGGCGGGTAAATTTGTTAGAACCAGAAATTACCGTTTACCGAATTAAAGAGAAAAAAATTGATTAATATTTTAGGGGATTTGGATT
TATTTTTAAAAAGTCAAAATGCGAGTTGGCTTATACG

Annotation (GO term)
GenBank top hits (Blast detail)Scoree value
XP_002884394 zinc finger family protein [Arabidopsis lyrata subsp. lyrata]8139e-085
NP_566208 RING-H2 finger protein ATL51 [Arabidopsis thaliana]8012e-083
AAF01602 unknown protein [Arabidopsis thaliana]8012e-083
NP_197262 RING-H2 finger protein ATL52 [Arabidopsis thaliana]7546e-078
BAE98353 RING-H2 zinc finger protein-like [Arabidopsis thaliana]7546e-078

Swiss-Prot top hits (Blast detail)Scoree value
Q9SRQ8 RING-H2 finger protein ATL3A8011e-084
Q9LF64 Probable RING-H2 finger protein ATL5G7543e-079
P0C041 Putative RING-H2 finger protein ATL4H4641e-045
Q8LFY8 RING-H2 finger protein ATL1O3502e-032
Q8GW38 RING-H2 finger protein ATL1D2892e-025

TrEMBL top hits (Blast detail)Scoree value
Q0WS90 Putative uncharacterized protein At3g035508012e-083
Q0WWZ5 RING-H2 zinc finger protein-like (Fragment)7544e-078
B9SDD7 Ring finger protein, putative6263e-063
A3AAA9 Putative uncharacterized protein6131e-061
Q6Z8A6 Os02g0692000 protein6131e-061

Arabidopsis top hits (Blast detail)Scoree value
AT3G03550.1 zinc finger (C3HC4-type RING finger) family protein8019e-086
AT5G17600.1 zinc finger (C3HC4-type RING finger) family protein7543e-080
AT4G17905.1 ATL4H; protein binding / zinc ion binding4641e-046
AT1G72220.1 zinc finger (C3HC4-type RING finger) family protein3502e-033
AT4G33565.1 protein binding / zinc ion binding3072e-028

EST library breakdown for ESTs in the assembly
Library ESTsPercentage of ESTs in assembly
 
82  100%

Unigene MembersMember information